Archive BacDiveID:10.13145/bacdive7228.20230509.8.1

Strain identifier

BacDive ID: 7228

Type strain:

Species: Terasakiella pusilla

Strain Designation: IF 6, IF6

Strain history: CIP <- 1990, IFO <- Y. Terasaki: strain IF6

NCBI tax ID(s): 1123355 (strain), 64973 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 2577

BacDive-ID: 7228

DSM-Number: 6293

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Terasakiella pusilla IF 6 is a mesophilic bacterium that was isolated from putrid marine shellfish.

NCBI tax id

NCBI tax id	Matching level
1123355	strain
64973	species

strain history

@ref	history
2577	<- NCIMB <- ATCC <- Y. Terasaki
67770	IAM 14442 <-- IFO 13613 <-- Y. Terasaki IF6.
122065	CIP <- 1990, IFO <- Y. Terasaki: strain IF6

doi: 10.13145/bacdive7228.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Terasakiellaceae
genus: Terasakiella
species: Terasakiella pusilla
full scientific name: Terasakiella pusilla (Terasaki 1973) Satomi et al. 2002
synonyms
@ref synonym
20215 Spirillum pusillum
20215 Oceanospirillum pusillum

@ref	synonym
20215	Spirillum pusillum
20215	Oceanospirillum pusillum

@ref: 2577

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Terasakiellaceae

genus: Terasakiella

species: Terasakiella pusilla

full scientific name: Terasakiella pusilla (Terasaki 1973) Satomi et al. 2002 emend. Han et al. 2016

strain designation: IF 6, IF6

type strain: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
2577	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	yes	https://mediadive.dsmz.de/medium/514	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37142	Marine agar (MA)	yes		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122065	CIP Medium 13	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@ref	growth	type	temperature	range
2577	positive	growth	25	mesophilic
37142	positive	growth	25	mesophilic
67770	positive	growth	30	mesophilic

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	isolation date
2577	putrid marine shellfish
67770	Marine shellfish
122065	Other, Mussel, putrid infusion	Hiroshima	Japan	JPN	Asia	1961

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Other	#Decomposing animal
#Host	#Invertebrates (Other)

taxonmaps

@ref: 69479
File name: preview.99_5607.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_458;96_2157;97_3320;98_4183;99_5607&stattab=map
Last taxonomy: Terasakiella pusilla subclade
16S sequence: AB680460
Sequence Identity:
Total samples: 613
soil counts: 39
aquatic counts: 509
animal counts: 42
plant counts: 23

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
2577	1	Risk group (German classification)
122065	1	Risk group (French classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Terasakiella pusilla gene for 16S rRNA, partial sequence, strain:IFO 13613	AB000482	1318	ena	64973
20218	Terasakiella pusilla gene for 16S rRNA, partial sequence, strain: NBRC 13613	AB680460	1424	ena	64973
2577	Terasakiella pusilla gene for 16S rRNA, partial sequence, strain: IFO 13613	AB006768	1429	ena	64973

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Terasakiella pusilla DSM 6293	1123355.3	wgs	patric	1123355
66792	Terasakiella pusilla DSM 6293	2556921622	draft	img	1123355
67770	Terasakiella pusilla DSM 6293	GCA_000688235	contig	ncbi	1123355

GC content

@ref	GC-content	method
2577	45.8	high performance liquid chromatography (HPLC)
67770	50.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	yes	93.973	no
flagellated	yes	87.114	no
gram-positive	no	99.149	no
anaerobic	no	93.118	no
aerobic	yes	68.725	no
halophile	no	51.299	no
spore-forming	no	94.169	no
thermophile	no	96.499	yes
glucose-util	no	50.701	no
glucose-ferment	no	92.763	no

External links

@ref: 2577

culture collection no.: DSM 6293, ATCC 33338, IAM 14442, IFO 13613, NBRC 13613, NCIMB 2229, JCM 21225, CIP 103382, LMG 5308, LMG 7372

straininfo link

@ref: 76680
straininfo: 3667

literature

topic: Phylogeny
Pubmed-ID: 29701577
title: Terasakiella salincola sp. nov., a marine alphaproteobacterium isolated from seawater, and emended description of the genus Terasakiella.
authors: Yoon J, Kang DH
journal: Int J Syst Evol Microbiol
DOI: 10.1099/ijsem.0.002788
year: 2018
mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydroxybutyrates, Methylocystaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Polyesters, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
topic2: Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
2577	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6293)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-6293
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
37142	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/15173
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
76680	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID3667.1	StrainInfo: A central database for resolving microbial strain identifiers
122065	Curators of the CIP	Collection of Institut Pasteur (CIP 103382)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103382

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Culture and growth conditions

culture medium

culture temp

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

GC content

Genome-based predictions

predictions

External links

straininfo link

literature

Reference