Name: Methylorubrum rhodesianum RXM
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7169

Type strain:

Species: Methylorubrum rhodesianum

Strain Designation: RXM

Culture col. no.: CCUG 55905, DSM 14457, NCIMB 13779, VKM B-2239

Strain history: <- Y. A. Trotsenko; RXM <- N. V. Doronina <- F. Girio

NCBI tax ID(s): 29427 (species)

SI-ID 100757

NCIMB 13779, VKM B-2239, DSM 14457, KCTC 12964, ATCC BAA-714, CCUG 55905

Other strains from Methylorubrum rhodesianum

M. rhodesianum DSM 5687, ATCC 43882, NCIMB 12249, ... (type strain)
M. rhodesianum G-253, DSM 1759, ATCC 21611, JCM ...
M. rhodesianum D2_2, DSM 103741
M. rhodesianum JCM 21388, IAM 14898
M. rhodesianum JCM 2810, ATCC 21614, VKM B-2142
M. rhodesianum JCM 2815, NCIMB 10602
M. rhodesianum JCM 2816, NCIMB 10611

Section

Methylorubrum rhodesianum RXM is an aerobe, mesophilic bacterium that was isolated from soil.

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylorubrum*
	Species	**Methylorubrum rhodesianum**
	Full Scientific Name (LPSN)	Methylorubrum rhodesianum (Green et al. 1988) Green and Ardley 2018

	Synonym	Methylobacterium lusitanum
	Synonym	Methylobacterium rhodesianum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5362]

Culture medium

MEDIUM FOR DSM 14457 AND 14458 (DSMZ Medium 956)

[Ref.: #5362]

Culture medium growth

[Ref.: #5362]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5362]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5362]			growth	28 °C
[Ref.: #60785]			growth	30 °C

[Ref.: #5362]	Temperature range	mesophilic
[Ref.: #60785]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60785]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5362]	Sample type/isolated from	soil
[Ref.: #5362]	Country	Portugal
[Ref.: #5362]	Country ISO 3 Code	PRT
[Ref.: #5362]	Continent	Europe

[Ref.: #60785]	Sample type/isolated from	Soil
[Ref.: #60785]	Sampling date	1997-01-01
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB175635 (>99% sequence identity) for Methylorubrum from Microbeatlas

Aquatic Samples	23711
Soil Samples	23280
Animal Samples	47578
Plant Samples	16159
Total Samples	110728

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5362]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Methylobacterium lusitanum gene for 16S ribosomal RNA, partial sequence, strain:NCIMB 13779	AB175635	1435	ENA	141951 tax ID	*

Availability in culture collections External links

[Ref.: #5362]

Culture collection no.

CCUG 55905, DSM 14457, NCIMB 13779, VKM B-2239

[Ref.: #76622]

SI-ID 100757

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium suomiense sp. nov. and Methylobacterium lusitanum sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria.	Doronina NV, Trotsenko YA, Kuznetsov BB, Tourova TP, Salkinoja-Salonen MS	Int J Syst Evol Microbiol	10.1099/00207713-52-3-773	2002	*
Phylogeny	Reclassification of Methylobacterium chloromethanicum and Methylobacterium dichloromethanicum as later subjective synonyms of Methylobacterium extorquens and of Methylobacterium lusitanum as a later subjective synonym of Methylobacterium rhodesianum.	Kato Y, Asahara M, Arai D, Goto K, Yokota A	J Gen Appl Microbiol	10.2323/jgam.51.287	2005	*

References

#5362

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14457

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#60785 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55905

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76622

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100757.1 )

* These data were automatically processed and therefore are not curated

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