Strain identifier

BacDive ID: 7169

Type strain: No

Species: Methylorubrum rhodesianum

Strain Designation: RXM

Strain history: <- Y. A. Trotsenko; RXM <- N. V. Doronina <- F. Girio

NCBI tax ID(s): 29427 (species)

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General

@ref: 5362

BacDive-ID: 7169

DSM-Number: 14457

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Methylorubrum rhodesianum RXM is an aerobe, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 29427
  • Matching level: species

strain history

  • @ref: 5362
  • history: <- Y. A. Trotsenko; RXM <- N. V. Doronina <- F. Girio

doi: 10.13145/bacdive7169.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Methylobacteriaceae
  • genus: Methylorubrum
  • species: Methylorubrum rhodesianum
  • full scientific name: Methylorubrum rhodesianum (Green et al. 1988) Green and Ardley 2018

  • synonyms

    @refsynonym
    20215Methylobacterium lusitanum
    20215Methylobacterium rhodesianum

@ref: 5362

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Methylobacteriaceae

genus: Methylorubrum

species: Methylorubrum rhodesianum

full scientific name: Methylorubrum rhodesianum (Green et al. 1988) Green and Ardley 2018

strain designation: RXM

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5362
  • name: MEDIUM FOR DSM 14457 AND 14458 (DSMZ Medium 956)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/956
  • composition: Name: MEDIUM FOR DSM 14457 AND 14458 (DSMZ Medium 956) Composition: Methanol 5.0 g/l Methylamine 3.0 g/l (NH4)2SO4 2.0 g/l KH2PO4 2.0 g/l NaCl 0.5 g/l MgSO4 x 7 H2O 0.125 g/l FeSO4 x 7 H2O 0.002 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5362positivegrowth28mesophilic
60785positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60785
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
5362soilPortugalPRTEurope
60785Soil1997-01-01

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_253.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15368;96_177;97_192;98_215;99_253&stattab=map
  • Last taxonomy: Methylorubrum
  • 16S sequence: AB175635
  • Sequence Identity:
  • Total samples: 110728
  • soil counts: 23280
  • aquatic counts: 23711
  • animal counts: 47578
  • plant counts: 16159

Safety information

risk assessment

  • @ref: 5362
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Methylobacterium lusitanum gene for 16S ribosomal RNA, partial sequence, strain:NCIMB 13779
  • accession: AB175635
  • length: 1435
  • database: ena
  • NCBI tax ID: 141951

External links

@ref: 5362

culture collection no.: CCUG 55905, DSM 14457, NCIMB 13779, VKM B-2239

straininfo link

  • @ref: 76622
  • straininfo: 100757

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12054237Methylobacterium suomiense sp. nov. and Methylobacterium lusitanum sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria.Doronina NV, Trotsenko YA, Kuznetsov BB, Tourova TP, Salkinoja-Salonen MSInt J Syst Evol Microbiol10.1099/00207713-52-3-7732002Aerobiosis, Base Composition, DNA, Ribosomal/analysis, Methanol/*metabolism, Methylamines/metabolism, Methylobacterium/*classification/genetics/growth & development/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, *Soil MicrobiologyMetabolism
Phylogeny16314683Reclassification of Methylobacterium chloromethanicum and Methylobacterium dichloromethanicum as later subjective synonyms of Methylobacterium extorquens and of Methylobacterium lusitanum as a later subjective synonym of Methylobacterium rhodesianum.Kato Y, Asahara M, Arai D, Goto K, Yokota AJ Gen Appl Microbiol10.2323/jgam.51.2872005Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal, Fatty Acids/analysis, Methylobacterium/chemistry/*classification/genetics/metabolism, Methylobacterium extorquens/chemistry/*classification/genetics/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNAMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5362Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14457)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14457
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
60785Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55905)https://www.ccug.se/strain?id=55905
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76622Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100757.1StrainInfo: A central database for resolving microbial strain identifiers