Name: Methanohalophilus halophilus Z-7982
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7064

Type strain:

Species: Methanohalophilus halophilus

Strain Designation: Z-7982

Culture col. no.: DSM 3094, NBRC 107635, OCM 160

Strain history: <- T.N. Zhilina, Z-7982

NCBI tax ID(s): 2177 (species)

SI-ID 47693

DSM 3094, ATCC BAA-1071

Section

Methanohalophilus halophilus Z-7982 is an anaerobe, mesophilic, Gram-negative archaeon that was isolated from cyanobacterial mat and bottom deposits.

Gram-negative
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanohalophilus*
	Species	**Methanohalophilus halophilus**
	Full Scientific Name (LPSN)	Methanohalophilus halophilus (Zhilina 1984) Wilharm et al. 1991

Synonym

Methanococcus halophilus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1298]

Culture medium

METHANOHALOPHILUS HALOPHILUS MEDIUM (DSMZ Medium 329)

[Ref.: #1298]

Culture medium growth

[Ref.: #1298]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1298]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1298]			growth	30 °C

[Ref.: #1298]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1298]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.078

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.921

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1298]	Sample type/isolated from	cyanobacterial mat and bottom deposits
[Ref.: #1298]	Geographic location (country and/or sea, region)	Shark Bay, Hamelin-Pool
[Ref.: #1298]	Country	Australia
[Ref.: #1298]	Country ISO 3 Code	AUS
[Ref.: #1298]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733671 (>99% sequence identity) for Methanohalophilus from Microbeatlas

Aquatic Samples	111
Soil Samples	51
Animal Samples	2
Plant Samples	1
Total Samples	165

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1298]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1298]	Methanohalophilus halophilus partial 16S rRNA gene, type strain DSM 3094T	FN870068	1467	ENA	2177 tax ID
[Ref.: #20218]	Methanohalophilus halophilus strain Z-7982 16S ribosomal RNA gene, partial sequence	JQ346755	1265	ENA	2177 tax ID	*
[Ref.: #20218]	Methanohalophilus halophilus partial 16S rRNA gene, type strain DSM3094T	FR733671	1467	ENA	2177 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanohalophilus halophilus Z-7982	GCA_001889405	complete	GenBank	2177 tax ID	*
[Ref.: #66792]	Methanohalophilus halophilus DSM 3094	GCA_003722055	contig	GenBank	2177 tax ID	*
[Ref.: #66792]	Methanohalophilus halophilus Z-7982	GCA_900106905	contig	GenBank	2177 tax ID	*
[Ref.: #66792]	Methanohalophilus halophilus Z-7982	2642422606	draft	JGI IMG/M	2177 tax ID	*
[Ref.: #66792]	Methanohalophilus halophilus DSM 3094	2914862632	draft	JGI IMG/M	2177 tax ID	*
[Ref.: #66792]	Methanohalophilus halophilus strain Z-7982	2177.5	complete	PATRIC	2177 tax ID	*

[Ref.: #1298]

GC-content

42.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanohalophilus halophilus Z-7982 NCBI: GCA_001889405.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanohalophilus halophilus Z-7982 NCBI: GCA_001889405.1
[Ref.: #69480]	flagellated	no	97.444	no
[Ref.: #69480]	gram-positive	no	97.535	no
[Ref.: #69480]	anaerobic	yes	98.052	yes
[Ref.: #69480]	halophile	no	67.784	no
[Ref.: #69480]	spore-forming	no	96.172	no
[Ref.: #69480]	glucose-util	yes	73.594	no
[Ref.: #69480]	aerobic	no	93.968	yes
[Ref.: #69480]	thermophile	no	87.603	yes
[Ref.: #69480]	motile	no	93.567	no
[Ref.: #69480]	glucose-ferment	no	73.536	no

Availability in culture collections External links

[Ref.: #1298]

Culture collection no.

DSM 3094, NBRC 107635, OCM 160

[Ref.: #76521]

SI-ID 47693

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Methanohalophilus halophilus DSM 3094(T), Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia.	L'Haridon S, Corre E, Guan Y, Vinu M, La Cono V, Yakimov M, Stingl U, Toffin L, Jebbar M	Genome Announc	10.1128/genomeA.01604-16	2017	*
Phylogeny	Methanohalophilus levihalophilus sp. nov., a slightly halophilic, methylotrophic methanogen isolated from natural gas-bearing deep aquifers, and emended description of the genus Methanohalophilus.	Katayama T, Yoshioka H, Mochimaru H, Meng XY, Muramoto Y, Usami J, Ikeda H, Kamagata Y, Sakata S	Int J Syst Evol Microbiol	10.1099/ijs.0.063677-0	2014	*

References

#1298

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3094

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76521

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47693.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanohalophilus halophilus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF