Name: Methanosphaera cuniculi 1R-7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6979

Type strain:

Species: Methanosphaera cuniculi

Strain Designation: 1R-7

Culture col. no.: DSM 4103, OCM 183

Strain history: <- B. Biavati, Universita di Bologna, Bologna, Italy; 1R-7 <- B. Biavati {1986}

NCBI tax ID(s): 1077256 (species)

SI-ID 47793

DSM 4103

Special Collections

DSMZ

Section

When using BacDive for research please cite our paper

Methanosphaera cuniculi 1R-7 is an anaerobe archaeon that was isolated from rectum of rabbit.

anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Methanobacteria*
	Order	*Methanobacteriales*
	Family	*Methanobacteriaceae*
	Genus	*Methanosphaera*
	Species	**Methanosphaera cuniculi**
	Full Scientific Name (LPSN)	Methanosphaera cuniculi Biavati et al. 1990

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1589]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #1589]

Culture medium growth

[Ref.: #1589]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #1589]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1589]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	facultative anaerobe Confidence in %99.1

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1589]	Sample type/isolated from	rectum of rabbit
[Ref.: #1589]	Geographic location (country and/or sea, region)	Bologna
[Ref.: #1589]	Country	Italy
[Ref.: #1589]	Country ISO 3 Code	ITA
[Ref.: #1589]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Leporidae (Rabbit/Hare)
#Host Body-Site	#Gastrointestinal tract	#Rectum

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1589]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1589]	Methanosphaera cuniculi partial 16S rRNA gene, type strain DSM 4103T	HE582783	1486	GenBank ENA	1077256 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanosphaera cuniculi 1R-7	GCA_002287195	contig	GenBank ENA	1077256 tax ID	*
[Ref.: #66792]	Methanosphaera cuniculi DSM 4103	GCA_003149675	contig	GenBank ENA	1077256 tax ID	*
[Ref.: #66792]	Methanosphaera cuniculi 1R-7	2802429591	draft	JGI IMG/M	1077256 tax ID	*
[Ref.: #66792]	Methanosphaera cuniculi strain DSM 4103	1077256.4	wgs	PATRIC	1077256 tax ID	*

[Ref.: #1589]

GC-content

23.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methanosphaera cuniculi 1R-7 NCBI: GCA_002287195
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	58.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	76
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	99.1

Availability in culture collections External links

[Ref.: #1589]

Culture collection no.

DSM 4103, OCM 183

[Ref.: #76440]

SI-ID 47793

References

#1589

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4103

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76440

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47793.1 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanosphaera cuniculi in external resources:
SILVA
BRENDA
PANGAEA
GBIF