Name: Legionella tucsonensis 1087-AZ-H
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6756

Type strain:

Species: Legionella tucsonensis

Strain Designation: 1087-AZ-H

Culture col. no.: DSM 19246, ATCC 49180, CCUG 31119, CIP 105113, NCTC 12439

Strain history: CIP <- 1997, NCTC <- ATCC <- W.L. Thacker: strain 1087-AZ-H

NCBI tax ID(s): 40335 (species)

SI-ID 42338

ATCC 49180, CCUG 31119, NCTC 12439, CIP 105113, DSM 19246

Special Collections

Section

Legionella tucsonensis 1087-AZ-H is a microaerophile, Gram-negative bacterium that was isolated from human, pleural fluid from renal transplant patient.

Gram-negative
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Legionellales*
	Family	*Legionellaceae*
	Genus	*Legionella*
	Species	**Legionella tucsonensis**
	Full Scientific Name (LPSN)	Legionella tucsonensis Thacker et al. 1990

Information on morphological and physiological properties Morphology

[Ref.: #123682]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.896

[Ref.: #123682]	Cell shape	rod-shaped

[Ref.: #123682]	Motility	no

[Ref.: #7905]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7905]

Culture medium

BCYE-AGAR (DSMZ Medium 585)

[Ref.: #7905]

Culture medium growth

[Ref.: #7905]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7905]

Culture medium composition

expand / minimize

[Ref.: #34605]

Culture medium

MEDIUM 23 - for Afipia and Legionella

[Ref.: #34605]

Culture medium growth

[Ref.: #34605]

Culture medium composition

expand / minimize

[Ref.: #123682]

Culture medium

CIP Medium 23

[Ref.: #123682]

Culture medium growth

[Ref.: #123682]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7905]			growth	37 °C
[Ref.: #34605]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7905]

Oxygen tolerance

microaerophile

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #7905]		catalase	+	1.11.1.6
[Ref.: #7905]		cytochrome-c oxidase	-	1.9.3.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	tryptophan metabolism	71.05	27 of 38
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	phenylpropanoid biosynthesis	69.23	9 of 13
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	69.23	9 of 13
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	threonine metabolism	50	5 of 10
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	methionine metabolism	46.15	12 of 26
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	isoprenoid biosynthesis	34.62	9 of 26
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7905]	Sample type/isolated from	human, pleural fluid from renal transplant patient
[Ref.: #7905]	Geographic location (country and/or sea, region)	Tucson
[Ref.: #7905]	Country	USA
[Ref.: #7905]	Country ISO 3 Code	USA
[Ref.: #7905]	Continent	North America

[Ref.: #50434]	Sample type/isolated from	Human pleural fluid,63-year-old man
[Ref.: #50434]	Sampling date	1984
[Ref.: #50434]	Geographic location (country and/or sea, region)	Tucson
[Ref.: #50434]	Country	USA
[Ref.: #50434]	Country ISO 3 Code	USA
[Ref.: #50434]	Continent	North America

[Ref.: #123682]	Sample type/isolated from	Human, Pleural fluid from renal transplant patient
[Ref.: #123682]	Geographic location (country and/or sea, region)	Tucson, Arizona
[Ref.: #123682]	Country	United States of America
[Ref.: #123682]	Country ISO 3 Code	USA
[Ref.: #123682]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Oral cavity and Airways	#Pleural fluid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z32644 (>99% sequence identity) for Legionella tucsonensis subclade from Microbeatlas

Aquatic Samples	69
Soil Samples	52
Animal Samples	10
Plant Samples	14
Total Samples	145

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7905]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123682]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7905]	L.tucsonensis (1087-AZ-H) gene for 16S ribosomal RNA	Z32644	1452	GenBank ENA	40335 tax ID
[Ref.: #20218]	Legionella tucsonensis strain MDC1594 16S ribosomal RNA gene, partial sequence	JF720404	524	GenBank ENA	40335 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Legionella tucsonensis 1087-AZ-H	GCA_900640035	contig	GenBank ENA	40335 tax ID	*
[Ref.: #66792]	Legionella tucsonensis ATCC 49180	GCA_001468035	scaffold	GenBank ENA	40335 tax ID	*
[Ref.: #66792]	Legionella tucsonensis strain ATCC 49180	40335.7	wgs	PATRIC	40335 tax ID	*
[Ref.: #66792]	Legionella tucsonensis ATCC 49180	2695420558	draft	JGI IMG/M	40335 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Legionella tucsonensis ATCC 49180 NCBI: GCA_001468035.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Legionella tucsonensis ATCC 49180 NCBI: GCA_001468035.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.896	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.866	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	79.691	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.165	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.161	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	61.607	no

Availability in culture collections External links

[Ref.: #7905]

Culture collection no.

DSM 19246, ATCC 49180, CCUG 31119, CIP 105113, NCTC 12439

[Ref.: #76226]

SI-ID 42338

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Legionella tucsonensis sp. nov. isolated from a renal transplant recipient.	Thacker WL, Benson RF, Schifman RB, Pugh E, Steigerwalt AG, Mayberry WR, Brenner DJ, Wilkinson HW	J Clin Microbiol	10.1128/jcm.27.8.1831-1834.1989	1989	*

References

#7905

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19246

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34605 ; Curators of the CIP;
#50434 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31119

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76226

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42338.1 )

#123682 Collection of Institut Pasteur ; Curators of the CIP; CIP 105113
* These data were automatically processed and therefore are not curated

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Legionella tucsonensis ATCC 49180

Legionella tucsonensis ATCC 49180

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