Strain identifier
BacDive ID: 6756
Type strain:
Species: Legionella tucsonensis
Strain Designation: 1087-AZ-H
Strain history: CIP <- 1997, NCTC <- ATCC <- W.L. Thacker: strain 1087-AZ-H
NCBI tax ID(s): 40335 (species)
General
@ref: 7905
BacDive-ID: 6756
DSM-Number: 19246
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Legionella tucsonensis 1087-AZ-H is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from human, pleural fluid from renal transplant patient.
NCBI tax id
- NCBI tax id: 40335
- Matching level: species
strain history
@ref | history |
---|---|
7905 | <- H. E. Müller <- ATCC <- W. L. Thacker; 1087-AZ-H <- R. B. Schifman |
123682 | CIP <- 1997, NCTC <- ATCC <- W.L. Thacker: strain 1087-AZ-H |
doi: 10.13145/bacdive6756.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella tucsonensis
- full scientific name: Legionella tucsonensis Thacker et al. 1990
@ref: 7905
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella tucsonensis
full scientific name: Legionella tucsonensis Thacker et al. 1990
strain designation: 1087-AZ-H
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.996 | ||
123682 | negative | rod-shaped | no |
colony morphology
- @ref: 7905
- incubation period: 3-7 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7905 | BCYE-AGAR (DSMZ Medium 585) | yes | https://mediadive.dsmz.de/medium/585 | Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base |
34605 | MEDIUM 23 - for Afipia and Legionella | yes | Distilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml) | |
123682 | CIP Medium 23 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7905 | positive | growth | 37 | mesophilic |
34605 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 7905
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.963 |
enzymes
@ref | value | activity | ec |
---|---|---|---|
7905 | catalase | + | 1.11.1.6 |
7905 | cytochrome-c oxidase | - | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
7905 | human, pleural fluid from renal transplant patient | Tucson | USA | USA | North America | |
50434 | Human pleural fluid,63-year-old man | Tucson | USA | USA | North America | 1984 |
123682 | Human, Pleural fluid from renal transplant patient | Tucson, Arizona | United States of America | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Host | #Human | |
#Host Body Product | #Oral cavity and Airways | #Pleural fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_5935.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_70;97_584;98_4411;99_5935&stattab=map
- Last taxonomy: Legionella tucsonensis subclade
- 16S sequence: Z32644
- Sequence Identity:
- Total samples: 145
- soil counts: 52
- aquatic counts: 69
- animal counts: 10
- plant counts: 14
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7905 | 2 | Risk group (German classification) |
123682 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Legionella tucsonensis strain MDC1594 16S ribosomal RNA gene, partial sequence | JF720404 | 524 | ena | 40335 |
7905 | L.tucsonensis (1087-AZ-H) gene for 16S ribosomal RNA | Z32644 | 1452 | ena | 40335 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Legionella tucsonensis 1087-AZ-H | GCA_900640035 | contig | ncbi | 40335 |
66792 | Legionella tucsonensis ATCC 49180 | GCA_001468035 | scaffold | ncbi | 40335 |
66792 | Legionella tucsonensis strain ATCC 49180 | 40335.7 | wgs | patric | 40335 |
66792 | Legionella tucsonensis ATCC 49180 | 2695420558 | draft | img | 40335 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 62.332 | no |
gram-positive | no | 98.759 | no |
anaerobic | no | 98.003 | no |
aerobic | no | 89.666 | no |
halophile | no | 85.508 | no |
spore-forming | no | 93.655 | no |
glucose-util | yes | 58.017 | no |
motile | yes | 87.326 | no |
thermophile | no | 98.844 | yes |
glucose-ferment | no | 87.374 | no |
External links
@ref: 7905
culture collection no.: DSM 19246, ATCC 49180, CCUG 31119, CIP 105113, NCTC 12439
straininfo link
- @ref: 76226
- straininfo: 42338
literature
- topic: Phylogeny
- Pubmed-ID: 2671032
- title: Legionella tucsonensis sp. nov. isolated from a renal transplant recipient.
- authors: Thacker WL, Benson RF, Schifman RB, Pugh E, Steigerwalt AG, Mayberry WR, Brenner DJ, Wilkinson HW
- journal: J Clin Microbiol
- DOI: 10.1128/jcm.27.8.1831-1834.1989
- year: 1989
- mesh: Agglutination Tests, Chromatography, Gas, DNA, Bacterial/analysis, Fatty Acids/analysis, Fluorescent Antibody Technique, Humans, Immunosuppression Therapy, *Kidney Transplantation, Legionella/analysis/classification/growth & development/*isolation & purification, Male, Middle Aged, Nucleic Acid Hybridization, Pleural Effusion/*microbiology
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7905 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19246) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19246 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34605 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17097 | ||||
50434 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 31119) | https://www.ccug.se/strain?id=31119 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
76226 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42338.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123682 | Curators of the CIP | Collection of Institut Pasteur (CIP 105113) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105113 |