Strain identifier

BacDive ID: 6756

Type strain: Yes

Species: Legionella tucsonensis

Strain Designation: 1087-AZ-H

Strain history: CIP <- 1997, NCTC <- ATCC <- W.L. Thacker: strain 1087-AZ-H

NCBI tax ID(s): 40335 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7905

BacDive-ID: 6756

DSM-Number: 19246

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Legionella tucsonensis 1087-AZ-H is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from human, pleural fluid from renal transplant patient.

NCBI tax id

  • NCBI tax id: 40335
  • Matching level: species

strain history

@refhistory
7905<- H. E. Müller <- ATCC <- W. L. Thacker; 1087-AZ-H <- R. B. Schifman
123682CIP <- 1997, NCTC <- ATCC <- W.L. Thacker: strain 1087-AZ-H

doi: 10.13145/bacdive6756.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella tucsonensis
  • full scientific name: Legionella tucsonensis Thacker et al. 1990

@ref: 7905

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella tucsonensis

full scientific name: Legionella tucsonensis Thacker et al. 1990

strain designation: 1087-AZ-H

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.996
123682negativerod-shapedno

colony morphology

  • @ref: 7905
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7905BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
34605MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
123682CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
7905positivegrowth37mesophilic
34605positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 7905
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.963

enzymes

@refvalueactivityec
7905catalase+1.11.1.6
7905cytochrome-c oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
7905human, pleural fluid from renal transplant patientTucsonUSAUSANorth America
50434Human pleural fluid,63-year-old manTucsonUSAUSANorth America1984
123682Human, Pleural fluid from renal transplant patientTucson, ArizonaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human
#Host Body Product#Oral cavity and Airways#Pleural fluid

taxonmaps

  • @ref: 69479
  • File name: preview.99_5935.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_70;97_584;98_4411;99_5935&stattab=map
  • Last taxonomy: Legionella tucsonensis subclade
  • 16S sequence: Z32644
  • Sequence Identity:
  • Total samples: 145
  • soil counts: 52
  • aquatic counts: 69
  • animal counts: 10
  • plant counts: 14

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79052Risk group (German classification)
1236822Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella tucsonensis strain MDC1594 16S ribosomal RNA gene, partial sequenceJF720404524ena40335
7905L.tucsonensis (1087-AZ-H) gene for 16S ribosomal RNAZ326441452ena40335

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella tucsonensis 1087-AZ-HGCA_900640035contigncbi40335
66792Legionella tucsonensis ATCC 49180GCA_001468035scaffoldncbi40335
66792Legionella tucsonensis strain ATCC 4918040335.7wgspatric40335
66792Legionella tucsonensis ATCC 491802695420558draftimg40335

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno62.332no
gram-positiveno98.759no
anaerobicno98.003no
aerobicno89.666no
halophileno85.508no
spore-formingno93.655no
glucose-utilyes58.017no
motileyes87.326no
thermophileno98.844yes
glucose-fermentno87.374no

External links

@ref: 7905

culture collection no.: DSM 19246, ATCC 49180, CCUG 31119, CIP 105113, NCTC 12439

straininfo link

  • @ref: 76226
  • straininfo: 42338

literature

  • topic: Phylogeny
  • Pubmed-ID: 2671032
  • title: Legionella tucsonensis sp. nov. isolated from a renal transplant recipient.
  • authors: Thacker WL, Benson RF, Schifman RB, Pugh E, Steigerwalt AG, Mayberry WR, Brenner DJ, Wilkinson HW
  • journal: J Clin Microbiol
  • DOI: 10.1128/jcm.27.8.1831-1834.1989
  • year: 1989
  • mesh: Agglutination Tests, Chromatography, Gas, DNA, Bacterial/analysis, Fatty Acids/analysis, Fluorescent Antibody Technique, Humans, Immunosuppression Therapy, *Kidney Transplantation, Legionella/analysis/classification/growth & development/*isolation & purification, Male, Middle Aged, Nucleic Acid Hybridization, Pleural Effusion/*microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7905Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19246)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19246
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34605Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17097
50434Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31119)https://www.ccug.se/strain?id=31119
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76226Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42338.1StrainInfo: A central database for resolving microbial strain identifiers
123682Curators of the CIPCollection of Institut Pasteur (CIP 105113)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105113