Legionella yabuuchiae (DSM 18492, JCM 14148, CCUG 55596)

Name: Legionella yabuuchiae (DSM 18492, JCM 14148, CCUG 55596)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6736

Type strain

Strain Designation OA1-2

Culture col. no. DSM 18492 JCM 14148 CCUG 55596 OA1-2

NCBI tax ID(s) 376727

Special Collections DSMZ CCUG JCM

History <- H. Miyamoto; OA1-2 H. Miyamoto OA1-2.

Links

Legionella yabuuchiae OA1-2 is a microaerophile bacterium that was isolated from soil contaminated with industrial wastes.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309538

DSM 18492,JCM 14148,CCUG 55596

@ref 20215

Last LPSN update 2026-02-09 11:19:18

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Legionellales

Family Legionellaceae

Genus Legionella

Species Legionella yabuuchiae

Full scientific name Legionella yabuuchiae Kuroki et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98

Colony morphology

7560

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7560	BCYE-AGAR (DSMZ Medium 585)		Medium recipe at MediaDive	Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
7560	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

7560

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125438		90.467

Enzymes

@ref	Value	Activity	Ec
7560	catalase	+	1.11.1.6
7560	cytochrome-c oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Engineered	#Waste	#Industrial waste
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7560	soil contaminated with industrial wastes	Osaka	Japan	JPN	Asia
60662	Soil contaminated with industrial wastes	Osaka	Japan	JPN	Asia
67770	Soil

Taxonmaps

69479

Global distribution of 16S sequence AB233210 (>99% sequence identity) for Legionella from Microbeatlas

Aquatic Samples	27
Soil Samples	3
Animal Samples	1
Plant Samples
Total Samples	31

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7560	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Leg_yabuuchiae_OA1-2.v1 assembly for Legionella yabuuchiae OA1-2	contig	GCA_900640115	376727.3	2968757950	376727	59.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Legionella yabuuchiae strain MDC1580 16S ribosomal RNA gene, partial sequence	JF720362	524		376727
7560	Legionella yabuuchiae gene for 16S rRNA, partial sequence, strain: OA1-2	AB233210	1422		376727

GC content

@ref	GC-content (mol%)	Method
7560	41.4
67770	41.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Legionella yabuuchiae OA1-2
NCBI: GCA_900640115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	95.04	yes
125438	aerobic	aerobicⓘ	no	75.84	yes
125438	spore-forming	spore-formingⓘ	no	90.47	no
125438	thermophilic	thermophileⓘ	no	94.36	yes
125438	flagellated	motile2+ⓘ	no	62.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Legionella impletisoli sp. nov. and Legionella yabuuchiae sp. nov., isolated from soils contaminated with industrial wastes in Japan.	Kuroki H, Miyamoto H, Fukuda K, Iihara H, Kawamura Y, Ogawa M, Wang Y, Ezaki T, Taniguchi H	Syst Appl Microbiol	10.1016/j.syapm.2006.11.005	2007

References

#7560	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18492
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#60662	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55596
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Legionella yabuuchiae (DSM 18492, JCM 14148, CCUG 55596)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900640115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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