Archive BacDiveID:10.13145/bacdive6736.20221219.7.1

Strain identifier

BacDive ID: 6736

Type strain:

Species: Legionella yabuuchiae

Strain Designation: OA1-2

Strain history: H. Miyamoto OA1-2.

NCBI tax ID(s): 376727 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 7560

BacDive-ID: 6736

DSM-Number: 18492

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Legionella yabuuchiae OA1-2 is a microaerophile, mesophilic bacterium that was isolated from soil contaminated with industrial wastes.

NCBI tax id

NCBI tax id: 376727
Matching level: species

strain history

doi: 10.13145/bacdive6736.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella yabuuchiae
full scientific name: Legionella yabuuchiae Kuroki et al. 2007

@ref: 7560

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella yabuuchiae

full scientific name: Legionella yabuuchiae Kuroki et al. 2007

strain designation: OA1-2

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.549

colony morphology

@ref: 7560
incubation period: 1-2 days

Culture and growth conditions

culture medium

@ref: 7560
name: BCYE-AGAR (DSMZ Medium 585)
growth: yes
link: https://mediadive.dsmz.de/medium/585
composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base

culture temp

@ref	growth	type	temperature	range
7560	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 7560
oxygen tolerance: microaerophile

spore formation

@ref: 69480
spore formation: no
confidence: 98.654

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 82.116

enzymes

@ref	value	activity	ec
7560	catalase	+	1.11.1.6
7560	cytochrome-c oxidase	+	1.9.3.1

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
7560	soil contaminated with industrial wastes	Osaka	Japan	JPN	Asia
60662	Soil contaminated with industrial wastes	Osaka	Japan	JPN	Asia
67770	Soil

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination
#Engineered	#Waste	#Industrial waste
#Environmental	#Terrestrial	#Soil

taxonmaps

@ref: 69479
File name: preview.99_179598.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_44477;97_86289;98_117192;99_179598&stattab=map
Last taxonomy: Legionella
16S sequence: AB233210
Sequence Identity:
Total samples: 31
soil counts: 3
aquatic counts: 27
animal counts: 1

Safety information

risk assessment

@ref: 7560
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Legionella yabuuchiae strain MDC1580 16S ribosomal RNA gene, partial sequence	JF720362	524	ena	376727
7560	Legionella yabuuchiae gene for 16S rRNA, partial sequence, strain: OA1-2	AB233210	1422	ena	376727

Genome sequences

@ref: 67770
description: Legionella yabuuchiae OA1-2
accession: GCA_900640115
assembly level: contig
database: ncbi
NCBI tax ID: 376727

GC content

@ref	GC-content	method
7560	41.4
67770	41.4	high performance liquid chromatography (HPLC)

External links

@ref: 7560

culture collection no.: DSM 18492, JCM 14148, CCUG 55596

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/721045
20218	http://www.straininfo.net/strains/721046

literature

topic: Phylogeny
Pubmed-ID: 17197147
title: Legionella impletisoli sp. nov. and Legionella yabuuchiae sp. nov., isolated from soils contaminated with industrial wastes in Japan.
authors: Kuroki H, Miyamoto H, Fukuda K, Iihara H, Kawamura Y, Ogawa M, Wang Y, Ezaki T, Taniguchi H
journal: Syst Appl Microbiol
DOI: 10.1016/j.syapm.2006.11.005
year: 2007
mesh: Acanthamoeba, Animals, Bacteriological Techniques/methods, Industrial Waste, Japan, Legionella/*classification/genetics/isolation & purification, Microbiological Techniques, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
topic2: Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
7560	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18492)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-18492
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
60662	Curators of the CCUG	Culture Collection University of Gothenburg (CCUG) (CCUG 55596)	https://www.ccug.se/strain?id=55596
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)