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Strain identifier

BacDive ID: 6736

Type strain: Yes

Species: Legionella yabuuchiae

Strain Designation: OA1-2

Strain history: H. Miyamoto OA1-2.

NCBI tax ID(s): 376727 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7560

BacDive-ID: 6736

DSM-Number: 18492

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Legionella yabuuchiae OA1-2 is a microaerophile, mesophilic bacterium that was isolated from soil contaminated with industrial wastes.

NCBI tax id

  • NCBI tax id: 376727
  • Matching level: species

strain history

doi: 10.13145/bacdive6736.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella yabuuchiae
  • full scientific name: Legionella yabuuchiae Kuroki et al. 2007

@ref: 7560

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella yabuuchiae

full scientific name: Legionella yabuuchiae Kuroki et al. 2007

strain designation: OA1-2

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.549

colony morphology

  • @ref: 7560
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 7560
  • name: BCYE-AGAR (DSMZ Medium 585)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/585
  • composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base

culture temp

@refgrowthtypetemperaturerange
7560positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 7560
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.654

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 82.116

enzymes

@refvalueactivityec
7560catalase+1.11.1.6
7560cytochrome-c oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7560soil contaminated with industrial wastesOsakaJapanJPNAsia
60662Soil contaminated with industrial wastesOsakaJapanJPNAsia
67770Soil

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Engineered#Waste#Industrial waste
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_179598.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_44477;97_86289;98_117192;99_179598&stattab=map
  • Last taxonomy: Legionella
  • 16S sequence: AB233210
  • Sequence Identity:
  • Total samples: 31
  • soil counts: 3
  • aquatic counts: 27
  • animal counts: 1

Safety information

risk assessment

  • @ref: 7560
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella yabuuchiae strain MDC1580 16S ribosomal RNA gene, partial sequenceJF720362524ena376727
7560Legionella yabuuchiae gene for 16S rRNA, partial sequence, strain: OA1-2AB2332101422ena376727

Genome sequences

  • @ref: 67770
  • description: Legionella yabuuchiae OA1-2
  • accession: GCA_900640115
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 376727

GC content

@refGC-contentmethod
756041.4
6777041.4high performance liquid chromatography (HPLC)

External links

@ref: 7560

culture collection no.: DSM 18492, JCM 14148, CCUG 55596

straininfo link

@refpassport
20218http://www.straininfo.net/strains/721045
20218http://www.straininfo.net/strains/721046

literature

  • topic: Phylogeny
  • Pubmed-ID: 17197147
  • title: Legionella impletisoli sp. nov. and Legionella yabuuchiae sp. nov., isolated from soils contaminated with industrial wastes in Japan.
  • authors: Kuroki H, Miyamoto H, Fukuda K, Iihara H, Kawamura Y, Ogawa M, Wang Y, Ezaki T, Taniguchi H
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2006.11.005
  • year: 2007
  • mesh: Acanthamoeba, Animals, Bacteriological Techniques/methods, Industrial Waste, Japan, Legionella/*classification/genetics/isolation & purification, Microbiological Techniques, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7560Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18492)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18492
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
60662Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55596)https://www.ccug.se/strain?id=55596
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)