Strain identifier
BacDive ID: 6736
Type strain: 
Species: Legionella yabuuchiae
Strain Designation: OA1-2
Strain history: H. Miyamoto OA1-2.
NCBI tax ID(s): 376727 (species)
version 8.1 (current version)
General
@ref: 7560
BacDive-ID: 6736
DSM-Number: 18492
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Legionella yabuuchiae OA1-2 is a microaerophile, mesophilic bacterium that was isolated from soil contaminated with industrial wastes.
NCBI tax id
- NCBI tax id: 376727
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7560 | <- H. Miyamoto; OA1-2 |
| 67770 | H. Miyamoto OA1-2. |
doi: 10.13145/bacdive6736.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella yabuuchiae
- full scientific name: Legionella yabuuchiae Kuroki et al. 2007
@ref: 7560
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella yabuuchiae
full scientific name: Legionella yabuuchiae Kuroki et al. 2007
strain designation: OA1-2
type strain: yes
Morphology
colony morphology
- @ref: 7560
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 7560
- name: BCYE-AGAR (DSMZ Medium 585)
- growth: yes
- link: https://mediadive.dsmz.de/medium/585
- composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7560 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 7560
- oxygen tolerance: microaerophile
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 7560 | catalase | + | 1.11.1.6 |
| 7560 | cytochrome-c oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7560 | soil contaminated with industrial wastes | Osaka | Japan | JPN | Asia |
| 60662 | Soil contaminated with industrial wastes | Osaka | Japan | JPN | Asia |
| 67770 | Soil |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Engineered | #Waste | #Industrial waste |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_179598.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_44477;97_86289;98_117192;99_179598&stattab=map
- Last taxonomy: Legionella
- 16S sequence: AB233210
- Sequence Identity:
- Total samples: 31
- soil counts: 3
- aquatic counts: 27
- animal counts: 1
Safety information
risk assessment
- @ref: 7560
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Legionella yabuuchiae strain MDC1580 16S ribosomal RNA gene, partial sequence | JF720362 | 524 | ena | 376727 |
| 7560 | Legionella yabuuchiae gene for 16S rRNA, partial sequence, strain: OA1-2 | AB233210 | 1422 | ena | 376727 |
Genome sequences
- @ref: 67770
- description: Legionella yabuuchiae OA1-2
- accession: GCA_900640115
- assembly level: contig
- database: ncbi
- NCBI tax ID: 376727
GC content
| @ref | GC-content | method |
|---|---|---|
| 7560 | 41.4 | |
| 67770 | 41.4 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 95.545 | no |
| gram-positive | no | 98.353 | no |
| anaerobic | no | 96.742 | no |
| aerobic | no | 90.948 | yes |
| halophile | no | 76.897 | no |
| spore-forming | no | 93.934 | no |
| thermophile | no | 95.516 | yes |
| glucose-util | yes | 78.55 | no |
| motile | no | 72.481 | no |
| glucose-ferment | no | 88.794 | no |
External links
@ref: 7560
culture collection no.: DSM 18492, JCM 14148, CCUG 55596
straininfo link
- @ref: 76206
- straininfo: 309538
literature
- topic: Phylogeny
- Pubmed-ID: 17197147
- title: Legionella impletisoli sp. nov. and Legionella yabuuchiae sp. nov., isolated from soils contaminated with industrial wastes in Japan.
- authors: Kuroki H, Miyamoto H, Fukuda K, Iihara H, Kawamura Y, Ogawa M, Wang Y, Ezaki T, Taniguchi H
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2006.11.005
- year: 2007
- mesh: Acanthamoeba, Animals, Bacteriological Techniques/methods, Industrial Waste, Japan, Legionella/*classification/genetics/isolation & purification, Microbiological Techniques, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7560 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18492) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18492 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 60662 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55596) | https://www.ccug.se/strain?id=55596 | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 76206 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309538.1 | StrainInfo: A central database for resolving microbial strain identifiers |