Name: Lactobacillus hominis 61D
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6705

Type strain:

Species: Lactobacillus hominis

Strain Designation: 61D, 361 D

Culture col. no.: DSM 23910, KCTC 21045, JCM 18988, CRBIP 24.179

Strain history: CIP <- 2009, F. Gasser, Institut Pasteur, Paris, France: strain 361 D

NCBI tax ID(s): 1423758 (strain), 1203033 (species)

SI-ID 386783

CRBIP24.179, DSM 23910, LMG 28401

Section

Lactobacillus hominis 61D is a microaerophile, mesophilic, Gram-positive bacterium that forms round colonies and was isolated from human intestine.

colony-forming
Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus hominis**
	Full Scientific Name (LPSN)	Lactobacillus hominis Cousin et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30463]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #119948]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30463]	Cell length	2.65 µm

[Ref.: #30463]	Cell width	0.55 µm

[Ref.: #30463]	Cell shape	rod-shaped
[Ref.: #119948]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30463]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.536

[Ref.: #119948]	Colony color	white
[Ref.: #119948]	Colony shape	round
[Ref.: #119948]	Cultivation medium used	De Man, Rogosa and Sharpe Agar

[Ref.: #119948]	Colony color	translucent
[Ref.: #119948]	Colony shape	round
[Ref.: #119948]	Cultivation medium used	Trypticase Soy Agar

[Ref.: #30463]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17362]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #17362]

Culture medium growth

[Ref.: #17362]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17362]

Culture medium composition

expand / minimize

[Ref.: #119948]

Culture medium

De Man, Rogosa and Sharpe Agar

[Ref.: #119948]

Culture medium growth

[Ref.: #119948]

Culture medium

Trypticase Soy Agar

[Ref.: #119948]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #17362]		growth	37 °C
[Ref.: #30463]		growth	25-45 °C
[Ref.: #30463]		optimum	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #119948]		growth	22-45 °C
[Ref.: #119948]	no	growth	15 °C

[Ref.: #17362]	Temperature range	mesophilic
[Ref.: #30463]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #119948]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30463]			optimum	6.5
[Ref.: #30463]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17362]	Oxygen tolerance	microaerophile
[Ref.: #30463]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	microaerophile
[Ref.: #119948]	Oxygen tolerance	facultative anaerobe

[Ref.: #30463]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30463]		NaCl		growth	0-5	%
[Ref.: #30463]		NaCl		optimum	2.5	%

[Ref.: #17362]	Murein short key	A11.31
[Ref.: #17362]	Murein types	A4alpha L-Lys-D-Asp

[Ref.: #30463]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	esculin ChEBI	+	hydrolysis
[Ref.: #30463]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	lactose ChEBI	+	carbon source
[Ref.: #30463]	maltose ChEBI	+	carbon source
[Ref.: #30463]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #119948]	nitrate ChEBI	-	reduction
[Ref.: #119948]	nitrate ChEBI	+	respiration
[Ref.: #119948]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30463]	salicin ChEBI	+	carbon source
[Ref.: #30463]	sucrose ChEBI	+	carbon source
[Ref.: #30463]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119948]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119948]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #119948]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119948]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119948]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119948]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #17362]	14768	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #119948]	12625	not determinedn.d.	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	+/-	+/-	+/-	+/-	-	+/-	+/-	-	-	+/-	+/-	-	-	+/-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119948]	13915	-	-	-	-	-	+	-	-	-	-	+	-	+	+	+	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	palmitate biosynthesis	81.82	18 of 22
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	pyrimidine metabolism	64.44	29 of 45
[Ref.: #66794]	photosynthesis	64.29	9 of 14
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	purine metabolism	56.38	53 of 94
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	NAD metabolism	55.56	10 of 18
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	vitamin B1 metabolism	53.85	7 of 13
[Ref.: #66794]	phenylalanine metabolism	53.85	7 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	coenzyme A metabolism	50	2 of 4
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	50	4 of 8
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	valine metabolism	44.44	4 of 9
[Ref.: #66794]	serine metabolism	44.44	4 of 9
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	39.29	11 of 28
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	isoleucine metabolism	37.5	3 of 8
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	tetrahydrofolate metabolism	35.71	5 of 14
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	methionine metabolism	34.62	9 of 26
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	chorismate metabolism	33.33	3 of 9
[Ref.: #66794]	L-lactaldehyde degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	citric acid cycle	28.57	4 of 14
[Ref.: #66794]	cysteine metabolism	27.78	5 of 18
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	alanine metabolism	24.14	7 of 29
[Ref.: #66794]	tryptophan metabolism	23.68	9 of 38
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	urea cycle	23.08	3 of 13
[Ref.: #66794]	leucine metabolism	23.08	3 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	lysine metabolism	21.43	9 of 42
[Ref.: #66794]	tyrosine metabolism	21.43	3 of 14
[Ref.: #66794]	heme metabolism	21.43	3 of 14
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
[Ref.: #66794]	arginine metabolism	20.83	5 of 24
[Ref.: #66794]	histidine metabolism	20.69	6 of 29
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17362]	Sample type/isolated from	human intestine
[Ref.: #17362]	Country	France
[Ref.: #17362]	Country ISO 3 Code	FRA
[Ref.: #17362]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human intestine

[Ref.: #67771]	Sample type/isolated from	From human intestine
[Ref.: #67771]	Country	France
[Ref.: #67771]	Country ISO 3 Code	FRA
[Ref.: #67771]	Continent	Europe

[Ref.: #119948]	Sample type/isolated from	Human, Intestine
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC589211 (>99% sequence identity) for Lactobacillus hominis from Microbeatlas

Aquatic Samples	3638
Soil Samples	4045
Animal Samples	147781
Plant Samples	1395
Total Samples	156859

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17362]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119948]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus hominis JCM 18988 gene for 16S rRNA, partial sequence	LC589211	1508	ENA	1203033 tax ID
[Ref.: #17362]	Lactobacillus hominis partial 16S rRNA gene, strain CRBIP 24.179	FR681902	1718	ENA	1423758 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus hominis DSM 23910 = CRBIP 24.179	GCA_001436125	scaffold	GenBank	1423758 tax ID
[Ref.: #67771]	Lactobacillus hominis DSM 23910 = CRBIP 24.179 type strain:CRBIP 24.179	GCA_000296835	contig	GenBank	1423758 tax ID
[Ref.: #66792]	Lactobacillus hominis CRBIP 24.179	872328.3	wgs	PATRIC	1423758 tax ID	*
[Ref.: #66792]	Lactobacillus hominis DSM 23910 = CRBIP 24.179	1423758.3	wgs	PATRIC	1423758 tax ID	*
[Ref.: #66792]	Lactobacillus hominis CRBIP 24.179	2537561925	draft	JGI IMG/M	1423758 tax ID	*
[Ref.: #66792]	Lactobacillus hominis DSM 23910	2663763150	draft	JGI IMG/M	1423758 tax ID	*

[Ref.: #17362]	GC-content	42.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30463]	GC-content	42.8 mol%
[Ref.: #67770]	GC-content	35.2 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus hominis DSM 23910 = CRBIP 24.179 DSM 23910 NCBI: GCA_001436125.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus hominis CRBIP 24.179 PATRIC: 872328.3
[Ref.: #69480]	motile	no	95.053	yes
[Ref.: #69480]	flagellated	no	97.955	yes
[Ref.: #69480]	gram-positive	yes	95.666	yes
[Ref.: #69480]	anaerobic	yes	53.55	yes
[Ref.: #69480]	halophile	yes	84.77	no
[Ref.: #69480]	spore-forming	no	94.062	no
[Ref.: #69480]	thermophile	no	99.128	yes
[Ref.: #69480]	glucose-util	yes	94.106	no
[Ref.: #69480]	aerobic	no	97.968	no
[Ref.: #69480]	glucose-ferment	yes	89.32	no

Availability in culture collections External links

[Ref.: #17362]

Culture collection no.

DSM 23910, KCTC 21045, JCM 18988, CRBIP 24.179

[Ref.: #76179]

SI-ID 386783

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine.	Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C	Genome Announc	10.1128/genomeA.00662-13	2013	*
Phylogeny	Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov.	Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Sproer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C	Int J Syst Evol Microbiol	10.1099/ijs.0.036665-0	2012	*

References

#17362

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23910

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30463

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26798 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76179

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID386783.1 )

#119948 Collection of Institut Pasteur ; Curators of the CIP; CRBIP24.179

#26798

IJSEM 53 2013 ( DOI 10.1099/ijs.0.036665-0 , PubMed 22328611 )

* These data were automatically processed and therefore are not curated

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Lactobacillus hominis DSM 23910 = CRBIP 24.179 DSM 23910

Lactobacillus hominis CRBIP 24.179

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