Lactobacillus hominis 61D is a microaerophile, Gram-positive, rod-shaped bacterium that forms round colonies and was isolated from human intestine.
Gram-positive rod-shaped colony-forming microaerophile genome sequence 16S sequence Bacteria| @ref 20215 |
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|
| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Lactobacillus |
| Species Lactobacillus hominis |
| Full scientific name Lactobacillus hominis Cousin et al. 2013 |
| @ref | Colony color | Colony shape | Medium used | |
|---|---|---|---|---|
| 119948 | white | round | De Man, Rogosa and Sharpe Agar | |
| 119948 | translucent | round | Trypticase Soy Agar |
| 30463 | Productionno |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 17362 | MRS MEDIUM (DSMZ Medium 11) | Medium recipe at MediaDive | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water | ||
| 119948 | De Man, Rogosa and Sharpe Agar | ||||
| 119948 | Trypticase Soy Agar |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 17362 | A11.31 | A4alpha L-Lys-D-Asp |
| 30463 | Observationaggregates in chains |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 30463 | 17057 ChEBI | cellobiose | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 30463 | 4853 ChEBI | esculin | + | hydrolysis | |
| 30463 | 28757 ChEBI | fructose | + | carbon source | |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 30463 | 28260 ChEBI | galactose | + | carbon source | |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 30463 | 17234 ChEBI | glucose | + | carbon source | |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 30463 | 17716 ChEBI | lactose | + | carbon source | |
| 30463 | 17306 ChEBI | maltose | + | carbon source | |
| 30463 | 37684 ChEBI | mannose | + | carbon source | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 30463 | 506227 ChEBI | N-acetylglucosamine | + | carbon source | |
| 119948 | 17632 ChEBI | nitrate | - | reduction | |
| 119948 | 17632 ChEBI | nitrate | + | respiration | |
| 119948 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 30463 | 16634 ChEBI | raffinose | + | carbon source | |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 30463 | 17814 ChEBI | salicin | + | carbon source | |
| 30463 | 17992 ChEBI | sucrose | + | carbon source | |
| 30463 | 27082 ChEBI | trehalose | + | carbon source | |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119948 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | + | 3.2.1.31 | from API zym |
| 119948 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 119948 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 119948 | ornithine decarboxylase | - | 4.1.1.17 | |
| 119948 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | teichoic acid biosynthesis | 100 | 1 of 1 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | acetoin degradation | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | peptidoglycan biosynthesis | 86.67 | 13 of 15 | ||
| 66794 | palmitate biosynthesis | 81.82 | 18 of 22 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | methylglyoxal degradation | 80 | 4 of 5 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | ppGpp biosynthesis | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | starch degradation | 70 | 7 of 10 | ||
| 66794 | pyrimidine metabolism | 64.44 | 29 of 45 | ||
| 66794 | photosynthesis | 64.29 | 9 of 14 | ||
| 66794 | pentose phosphate pathway | 63.64 | 7 of 11 | ||
| 66794 | ketogluconate metabolism | 62.5 | 5 of 8 | ||
| 66794 | glycine betaine biosynthesis | 60 | 3 of 5 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | oxidative phosphorylation | 57.14 | 52 of 91 | ||
| 66794 | purine metabolism | 56.38 | 53 of 94 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | NAD metabolism | 55.56 | 10 of 18 | ||
| 66794 | non-pathway related | 55.26 | 21 of 38 | ||
| 66794 | metabolism of disaccharids | 54.55 | 6 of 11 | ||
| 66794 | vitamin B1 metabolism | 53.85 | 7 of 13 | ||
| 66794 | phenylalanine metabolism | 53.85 | 7 of 13 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | coenzyme A metabolism | 50 | 2 of 4 | ||
| 66794 | adipate degradation | 50 | 1 of 2 | ||
| 66794 | gluconeogenesis | 50 | 4 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 50 | 4 of 8 | ||
| 66794 | suberin monomers biosynthesis | 50 | 1 of 2 | ||
| 66794 | dolichol and dolichyl phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 50 | 4 of 8 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | valine metabolism | 44.44 | 4 of 9 | ||
| 66794 | serine metabolism | 44.44 | 4 of 9 | ||
| 66794 | ubiquinone biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | propanol degradation | 42.86 | 3 of 7 | ||
| 66794 | lipid metabolism | 41.94 | 13 of 31 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | Entner Doudoroff pathway | 40 | 4 of 10 | ||
| 66794 | glutamate and glutamine metabolism | 39.29 | 11 of 28 | ||
| 66794 | isoprenoid biosynthesis | 38.46 | 10 of 26 | ||
| 66794 | isoleucine metabolism | 37.5 | 3 of 8 | ||
| 66794 | degradation of sugar alcohols | 37.5 | 6 of 16 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | tetrahydrofolate metabolism | 35.71 | 5 of 14 | ||
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | ||
| 66794 | methionine metabolism | 34.62 | 9 of 26 | ||
| 66794 | degradation of hexoses | 33.33 | 6 of 18 | ||
| 66794 | CO2 fixation in Crenarchaeota | 33.33 | 3 of 9 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | chorismate metabolism | 33.33 | 3 of 9 | ||
| 66794 | L-lactaldehyde degradation | 33.33 | 1 of 3 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | octane oxidation | 33.33 | 1 of 3 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | reductive acetyl coenzyme A pathway | 28.57 | 2 of 7 | ||
| 66794 | citric acid cycle | 28.57 | 4 of 14 | ||
| 66794 | cysteine metabolism | 27.78 | 5 of 18 | ||
| 66794 | vitamin B6 metabolism | 27.27 | 3 of 11 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | alanine metabolism | 24.14 | 7 of 29 | ||
| 66794 | tryptophan metabolism | 23.68 | 9 of 38 | ||
| 66794 | sulfate reduction | 23.08 | 3 of 13 | ||
| 66794 | urea cycle | 23.08 | 3 of 13 | ||
| 66794 | leucine metabolism | 23.08 | 3 of 13 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | ||
| 66794 | lysine metabolism | 21.43 | 9 of 42 | ||
| 66794 | tyrosine metabolism | 21.43 | 3 of 14 | ||
| 66794 | heme metabolism | 21.43 | 3 of 14 | ||
| 66794 | glutathione metabolism | 21.43 | 3 of 14 | ||
| 66794 | arginine metabolism | 20.83 | 5 of 24 | ||
| 66794 | histidine metabolism | 20.69 | 6 of 29 |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17362 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | |
| 119948 | not determinedn.d. | - | - | - | - | - | - | - | - | - | +/- | +/- | +/- | +/- | - | - | - | - | - | - | - | - | +/- | - | - | +/- | +/- | +/- | +/- | +/- | - | +/- | +/- | - | - | +/- | +/- | - | - | +/- | - | - | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence LC589211 (>99% sequence identity) for Lactobacillus hominis from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67771 | ASM29683v1 assembly for Lactobacillus hominis DSM 23910 = CRBIP 24.179 type strain:CRBIP 24.179 | contig | 1423758 | 71.39 | ||||
| 67770 | ASM143612v1 assembly for Lactobacillus hominis DSM 23910 = CRBIP 24.179 | scaffold | 1423758 | 69.1 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 93.41 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 83.56 | no |
| 125439 | motility | BacteriaNetⓘ | no | 87.70 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.82 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 96.30 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 68.79 | no |
| 125438 | aerobic | aerobicⓘ | no | 96.84 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 91.21 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 95.00 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization. | Pereira FC, Wasmund K, Cobankovic I, Jehmlich N, Herbold CW, Lee KS, Lee KS, Sziranyi B, Vesely C, Decker T, Stocker R, Warth B, von Bergen M, Wagner M, Berry D. | Nat Commun | 10.1038/s41467-020-18928-1 | 2020 | |
| Phylogeny | Using glycolysis enzyme sequences to inform Lactobacillus phylogeny. | Brandt K, Barrangou R. | Microb Genom | 10.1099/mgen.0.000187 | 2018 | |
| Genetics | Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine. | Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C | Genome Announc | 10.1128/genomeA.00662-13 | 2013 | |
| Phylogeny | Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov. | Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Sproer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C | Int J Syst Evol Microbiol | 10.1099/ijs.0.036665-0 | 2012 |
| #17362 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23910 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #26798 | IJSEM 53 2013 ( DOI 10.1099/ijs.0.036665-0 , PubMed 22328611 ) |
| #30463 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26798 |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119948 | Collection of Institut Pasteur ; Curators of the CIP; CRBIP24.179 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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