Strain identifier

BacDive ID: 6705

Type strain: Yes

Species: Lactobacillus hominis

Strain Designation: 61D

Culture col. no.: DSM 23910, CRBIP 24.179, KCTC 21045, JCM 18988

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17362

BacDive-ID: 6705

DSM-Number: 23910

keywords: mesophilic, Gram-positive, microaerophile, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Lactobacillus hominis 61D is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from human intestine.

strain history

doi: 10.13145/bacdive6705.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus hominis
  • full scientific name: Lactobacillus hominis Cousin et al. 2013

@ref: 17362

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus hominis

full scientific name: Lactobacillus hominis Cousin et al. 2013

strain designation: 61D

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30463positive2.65 µm0.55 µmrod-shapedno
67771rod-shapedno
67771positive

pigmentation

  • @ref: 30463
  • production: no

Culture and growth conditions

culture medium

  • @ref: 17362
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17362positivegrowth37mesophilic
30463positivegrowth25-45
30463positiveoptimum37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic

culture pH

@refabilitytypepH
30463positivegrowth05-08
30463positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
17362microaerophile
30463facultative anaerobe
67771microaerophile

spore formation

@refspore formation
30463no
67771no

halophily

@refsaltgrowthtested relationconcentration
30463NaClpositivegrowth0-5 %
30463NaClpositiveoptimum2.5 %

murein

  • @ref: 17362
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

observation

  • @ref: 30463
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3046317057cellobiose+carbon source
3046328757fructose+carbon source
3046328260galactose+carbon source
3046317234glucose+carbon source
3046317716lactose+carbon source
3046317306maltose+carbon source
3046337684mannose+carbon source
30463506227N-acetylglucosamine+carbon source
3046316634raffinose+carbon source
3046317814salicin+carbon source
3046317992sucrose+carbon source
3046327082trehalose+carbon source
304634853esculin+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch+builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
17362----------++++--------++-++++++++--++--+----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
17362human intestineFranceFRAEurope
67770Human intestine
67771From human intestineFranceFRAEurope

isolation source categories

Cat1Cat2
#Host#Human
#Host Body Product#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 17362
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
17362Lactobacillus hominis partial 16S rRNA gene, strain CRBIP 24.179FR6819021718ena1423758
67770Lactobacillus hominis JCM 18988 gene for 16S rRNA, partial sequenceLC5892111508ena1203033

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus hominis DSM 23910 = CRBIP 24.179 type strain:CRBIP 24.179GCA_000296835contigncbi1423758
66792Lactobacillus hominis DSM 23910 = CRBIP 24.179 DSM 23910GCA_001436125scaffoldncbi1423758
66792Lactobacillus hominis MGYG-HGUT-02360GCA_902386305scaffoldncbi1203033
66792Lactobacillus hominis MGBC122240GCA_910584015scaffoldncbi1203033
66792Lactobacillus hominis CRBIP 24.179872328.3wgspatric1423758
66792Lactobacillus hominis DSM 23910 = CRBIP 24.1791423758.3wgspatric1423758
66792Lactobacillus hominis strain MGBC1222401203033.4wgspatric1203033
66792Lactobacillus hominis strain MGYG-HGUT-023601203033.3wgspatric1203033
66792Lactobacillus hominis CRBIP 24.1792537561925draftimg1423758
66792Lactobacillus hominis DSM 239102663763150draftimg1423758
67770Lactobacillus hominis DSM 23910 = CRBIP 24.179 strain DSM 23910, whole genome shotgun sequencing projectAYZP00000000nuccore1423758
67771Lactobacillus hominis DSM 23910 = CRBIP 24.179 strain type strain:CRBIP 24.179, whole genome shotgun sequencing projectCAKE01000000nuccore1423758

GC content

@refGC-contentmethod
1736242.8high performance liquid chromatography (HPLC)
3046342.8
6777035.2genome sequence analysis

External links

@ref: 17362

culture collection no.: DSM 23910, CRBIP 24.179, KCTC 21045, JCM 18988

straininfo link

@refpassport
20218http://www.straininfo.net/strains/884147
20218http://www.straininfo.net/strains/884146

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17362Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23910)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23910
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2679810.1099/ijs.0.036665-022328611
30463Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126798
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc