Name: Lactobacillus gigeriorum 202
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6700

Type strain:

Species: Lactobacillus gigeriorum

Strain Designation: 202

Culture col. no.: DSM 23908, CRBIP 24.85, KCTC 21043

Strain history: <- DSM <- S Cousin, CIP, Genopole, Paris, France, CRBIP 24.85 <- F Gasser, CIP <- INRA, France

NCBI tax ID(s): 1423751 (strain), 1203069 (species)

SI-ID 379262

CRBIP 24.85, DSM 23908, LMG 28399

Section

Lactobacillus gigeriorum 202 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from chicken crop.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus gigeriorum**
	Full Scientific Name (LPSN)	Lactobacillus gigeriorum Cousin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30008]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30008]	Cell length	0.59-2.07 µm

[Ref.: #30008]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #30008]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.892

[Ref.: #30008]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17361]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #17361]

Culture medium growth

[Ref.: #17361]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17361]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17361]	growth	37 °C
[Ref.: #30008]	growth	20-45 °C
[Ref.: #30008]	optimum	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #17361]	Temperature range	mesophilic
[Ref.: #30008]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30008]			optimum	6
[Ref.: #30008]			growth	04-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17361]	Oxygen tolerance	microaerophile
[Ref.: #30008]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	microaerophile

[Ref.: #30008]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30008]		NaCl		growth	0-3	%
[Ref.: #30008]		NaCl		optimum	1	%

[Ref.: #30008]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #30008]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #30008]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30008]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30008]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30008]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #30008]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30008]	salicin ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #30008]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #17361]	14766	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17361]	Sample type/isolated from	chicken crop
[Ref.: #17361]	Country	France
[Ref.: #17361]	Country ISO 3 Code	FRA
[Ref.: #17361]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From chicken crop
[Ref.: #67771]	Geographic location (country and/or sea, region)	Institut National de Recherche Agronomique, Nantes
[Ref.: #67771]	Country	France
[Ref.: #67771]	Country ISO 3 Code	FRA
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Host	#Birds	#Chicken

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR681899 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	4
Soil Samples	15
Animal Samples	359
Plant Samples	22
Total Samples	400

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17361]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17361]	Lactobacillus gigeriorum partial 16S rRNA gene, strain CRBIP 24.85	FR681899	1448	ENA	1423751 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85	GCA_001436575	contig	GenBank	1423751 tax ID
[Ref.: #66792]	Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 type strain: CRBIP 24.85	GCA_000296855	contig	GenBank	1423751 tax ID	*
[Ref.: #66792]	Lactobacillus gigeriorum CRBIP 24.85	872325.3	wgs	PATRIC	1423751 tax ID	*
[Ref.: #66792]	Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85	1423751.3	wgs	PATRIC	1423751 tax ID	*
[Ref.: #66792]	Lactobacillus gigeriorum DSM 23908	2700989126	draft	JGI IMG/M	1423751 tax ID	*
[Ref.: #66792]	Lactobacillus gigeriorum CRBIP 24.85	2597489909	draft	JGI IMG/M	1423751 tax ID	*

[Ref.: #17361]	GC-content	41.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	41.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 PATRIC: 1423751.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus gigeriorum CRBIP 24.85 PATRIC: 872325.3
[Ref.: #69480]	motile	no	95.853	yes
[Ref.: #69480]	flagellated	no	98.308	no
[Ref.: #69480]	gram-positive	yes	94.385	yes
[Ref.: #69480]	anaerobic	yes	58.377	no
[Ref.: #69480]	halophile	yes	58.979	yes
[Ref.: #69480]	spore-forming	no	96.364	yes
[Ref.: #69480]	thermophile	no	99.43	no
[Ref.: #69480]	glucose-util	yes	93.286	no
[Ref.: #69480]	aerobic	no	97.36	no
[Ref.: #69480]	glucose-ferment	yes	90.509	no

Availability in culture collections External links

[Ref.: #17361]

Culture collection no.

DSM 23908, CRBIP 24.85, KCTC 21043

[Ref.: #76174]

SI-ID 379262

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.	Cousin S, Ma L, Creno S, Clermont D, Loux V, Bizet C, Bouchier C	J Bacteriol	10.1128/JB.01427-12	2012	*
Phylogeny	Lactobacillus gigeriorum sp. nov., isolated from chicken crop.	Cousin S, Gulat-Okalla ML, Motreff L, Gouyette C, Bouchier C, Clermont D, Bizet C	Int J Syst Evol Microbiol	10.1099/ijs.0.028217-0	2011	*

References

#17361

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23908

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30008

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26372 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76174

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379262.1 )

#26372

IJSEM 330 2012 ( DOI 10.1099/ijs.0.028217-0 , PubMed 21421927 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lactobacillus gigeriorum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85

Lactobacillus gigeriorum CRBIP 24.85

Change proposal

Change proposal