Secundilactobacillus odoratitofui (DSM 19909, BCRC 17810, JCM 15043)

Name: Secundilactobacillus odoratitofui (DSM 19909, BCRC 17810, JCM 15043)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6697

Type strain

Culture col. no. DSM 19909 BCRC 17810 JCM 15043 YIT 11304 LMG 30911

NCBI tax ID(s) 480930

Special Collections DSMZ JCM Literature strains

History <- K. Watanabe, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan; YIT 11304 K. Watanabe YIT 11304.

Links

Secundilactobacillus odoratitofui DSM 19909 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from fermented brine used for stinky tofu production.

Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408158

LMG 30911,BCRC 17810,JCM 15043,DSM 19909

@ref 20215

Last LPSN update 2026-02-09 11:19:17

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Secundilactobacillus

Species Secundilactobacillus odoratitofui

Full scientific name Secundilactobacillus odoratitofui (Chao et al. 2010) Zheng et al. 2020

Synonyms (1)

Lactobacillus odoratitofui

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29711	positive	01-03 µm	0.3-0.4 µm	rod-shaped
125438	positive				93.389
125439	positive				95.6

Pigmentation

29711

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8381	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8381	positive	growth	30
29711	positive	growth	15-40
29711	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
29711	positive	optimum	7
29711	positive	growth	4.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8381	microaerophile
29711	facultative anaerobe
125439	obligate aerobe	94

Spore formation

29711

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29711	NaCl	positive	growth	01-07 %
29711	NaCl	positive	optimum	01-07 %

Observation

29711

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
29711	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
29711	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
29711	24265 ChEBI	gluconate	+	carbon source
29711	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
29711	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
29711	17306 ChEBI	maltose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
29711	28053 ChEBI	melibiose	+	carbon source
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
29711	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
29711	33942 ChEBI	ribose	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
29711	18222 ChEBI	xylose	+	carbon source

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8381	-	-	-	-	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-
8381	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	-	+/-	-	-	-	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-
8381	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
8381	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	-	+	-	-	-	+	-	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8381	fermented brine used for stinky tofu production	Taipei County	Taiwan, Province of China	TWN	Asia
67770	Stinky tofu brine in Taipei

Taxonmaps

69479

Global distribution of 16S sequence LC258151 (>99% sequence identity) for Secundilactobacillus from Microbeatlas

Aquatic Samples	475
Soil Samples	256
Animal Samples	5495
Plant Samples	232
Total Samples	6458

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8381	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143489v1 assembly for Secundilactobacillus odoratitofui DSM 19909 = JCM 15043	scaffold	GCA_001434895	1423776.4	2671180363	1423776	70.1
67770	ASM131318v1 assembly for Secundilactobacillus odoratitofui DSM 19909 = JCM 15043	contig	GCA_001313185	1423776.3	2734481935	1423776	35.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8381	Secundilactobacillus odoratitofui gene for 16S rRNA, partial sequence	AB365975	1498		1423776
67770	Lactobacillus odoratitofui gene for 16S ribosomal RNA, partial sequence, strain: JCM 15043	LC258151	1509		480930

GC content

@ref	GC-content (mol%)	Method
8381	43.7	high performance liquid chromatography (HPLC)
29711	43.7
67770	44.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Secundilactobacillus odoratitofui DSM 19909 = JCM 15043
NCBI: GCA_001434895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	78.00	no
125439	motility	BacteriaNetⓘ	no	70.20	no
125439	gram_stain	BacteriaNetⓘ	positive	95.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus odoratitofui DSM 19909 = JCM 15043
PATRIC: 1423776.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.39	yes
125438	anaerobic	anaerobicⓘ	no	81.76	no
125438	spore-forming	spore-formingⓘ	no	80.36	yes
125438	aerobic	aerobicⓘ	no	95.08	yes
125438	thermophilic	thermophileⓘ	no	94.95	no
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus albidus sp. nov., isolated from grassland soil.	Zhuang J, Xin D, Zhang YQ, Guo J, Zhang J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002356	2017
Phylogeny	Secundilactobacillus folii sp. nov., isolated from fermented tea leaves in Thailand.	Phuengjayaem S, Nuhwa R, Phongsopitanun W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004635	2021
Phylogeny	Lactobacillus silagei sp. nov., isolated from orchardgrass silage.	Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.053124-0	2013
Phylogeny	Lactobacillus odoratitofui sp. nov., isolated from stinky tofu brine.	Chao SH, Sasamoto M, Kudo Y, Fujimoto J, Tsai YC, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijs.0.019307-0	2010
Phylogeny	Characterization of two novel pentose-fermenting and GABA-producing species: Levilactobacillus tujiorum sp. nov. and Secundilactobacillus angelensis sp. nov. Isolated from a solid-state fermented zha-chili.	Zhang Z, Wang Y, Dong Y, Xiang F, Zhang Y, Zhang H, Sun Y, Guo Z	Syst Appl Microbiol	10.1016/j.syapm.2022.126344	2022

References

#8381	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19909
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26094	IJSEM 2903 2010 ( DOI 10.1099/ijs.0.019307-0 , PubMed 20097799 )
#29711	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26094
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Secundilactobacillus odoratitofui (DSM 19909, BCRC 17810, JCM 15043)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001434895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media