Name: Secundilactobacillus odoratitofui DSM 19909
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6697

Type strain:

Species: Secundilactobacillus odoratitofui

Culture col. no.: DSM 19909, BCRC 17810, JCM 15043, YIT 11304, LMG 30911

Strain history: K. Watanabe YIT 11304.

NCBI tax ID(s): 480930 (species)

SI-ID 408158

DSM 19909

Section

Secundilactobacillus odoratitofui DSM 19909 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented brine used for stinky tofu production.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Secundilactobacillus*
	Species	**Secundilactobacillus odoratitofui**
	Full Scientific Name (LPSN)	Secundilactobacillus odoratitofui (Chao et al. 2010) Zheng et al. 2020

Synonym

Lactobacillus odoratitofui

Information on morphological and physiological properties Morphology

[Ref.: #29711]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #29711]	Cell length	01-03 µm

[Ref.: #29711]	Cell width	0.3-0.4 µm

[Ref.: #29711]	Cell shape	rod-shaped

[Ref.: #29711]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.777

[Ref.: #29711]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8381]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8381]

Culture medium growth

[Ref.: #8381]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8381]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8381]	growth	30 °C
[Ref.: #29711]	growth	15-40 °C
[Ref.: #29711]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #8381]	Temperature range	mesophilic
[Ref.: #29711]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29711]			optimum	7
[Ref.: #29711]			growth	4.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8381]	Oxygen tolerance	microaerophile
[Ref.: #29711]	Oxygen tolerance	facultative anaerobe

[Ref.: #29711]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29711]		NaCl		growth	01-07	%
[Ref.: #29711]		NaCl		optimum	01-07	%

[Ref.: #29711]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	gluconate ChEBI	+	carbon source
[Ref.: #29711]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	maltose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	ribose ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29711]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8381]	14412	-	-	-	-	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-
[Ref.: #8381]	14411	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	-	+/-	-	-	-	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-
[Ref.: #8381]	14410	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8381]	14409	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	-	+	-	-	-	+	-	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8381]	Sample type/isolated from	fermented brine used for stinky tofu production
[Ref.: #8381]	Geographic location (country and/or sea, region)	Taipei County
[Ref.: #8381]	Country	Taiwan
[Ref.: #8381]	Country ISO 3 Code	TWN
[Ref.: #8381]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Stinky tofu brine in Taipei
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC258151 (>99% sequence identity) for Secundilactobacillus from Microbeatlas

Aquatic Samples	475
Soil Samples	256
Animal Samples	5495
Plant Samples	232
Total Samples	6458

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8381]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus odoratitofui gene for 16S ribosomal RNA, partial sequence, strain: JCM 15043	LC258151	1509	ENA	480930 tax ID
[Ref.: #8381]	Lactobacillus odoratitofui gene for 16S rRNA, partial sequence	AB365975	1498	ENA	1423776 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Secundilactobacillus odoratitofui DSM 19909 = JCM 15043	GCA_001434895	scaffold	GenBank	1423776 tax ID
[Ref.: #67770]	Secundilactobacillus odoratitofui DSM 19909 = JCM 15043	GCA_001313185	contig	GenBank	1423776 tax ID
[Ref.: #66792]	Lactobacillus odoratitofui DSM 19909 = JCM 15043	1423776.4	wgs	PATRIC	1423776 tax ID	*
[Ref.: #66792]	Lactobacillus odoratitofui DSM 19909 = JCM 15043	1423776.3	wgs	PATRIC	1423776 tax ID	*
[Ref.: #66792]	Secundilactobacillus odoratitofui JCM 15043	2734481935	draft	JGI IMG/M	1423776 tax ID	*
[Ref.: #66792]	Secundilactobacillus odoratitofui DSM 19909	2671180363	draft	JGI IMG/M	1423776 tax ID	*

[Ref.: #8381]	GC-content	43.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29711]	GC-content	43.7 mol%
[Ref.: #67770]	GC-content	44.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 DSM 19909 NCBI: GCA_001434895.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus odoratitofui DSM 19909 = JCM 15043 PATRIC: 1423776.4
[Ref.: #69480]	motile	no	92.508	no
[Ref.: #69480]	gram-positive	yes	97.345	yes
[Ref.: #69480]	anaerobic	no	87.207	yes
[Ref.: #69480]	halophile	yes	89.835	no
[Ref.: #69480]	spore-forming	no	93.678	yes
[Ref.: #69480]	thermophile	no	99.338	no
[Ref.: #69480]	glucose-util	yes	85.125	yes
[Ref.: #69480]	aerobic	no	95.898	yes
[Ref.: #69480]	flagellated	no	97.653	yes
[Ref.: #69480]	glucose-ferment	yes	84.774	no

Availability in culture collections External links

[Ref.: #8381]

Culture collection no.

DSM 19909, BCRC 17810, JCM 15043, YIT 11304, LMG 30911

[Ref.: #76171]

SI-ID 408158

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Secundilactobacillus folii sp. nov., isolated from fermented tea leaves in Thailand.	Phuengjayaem S, Nuhwa R, Phongsopitanun W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004635	2021	*
Phylogeny	Lactobacillus silagei sp. nov., isolated from orchardgrass silage.	Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.053124-0	2013	*
Phylogeny	Lactobacillus odoratitofui sp. nov., isolated from stinky tofu brine.	Chao SH, Sasamoto M, Kudo Y, Fujimoto J, Tsai YC, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijs.0.019307-0	2010	*
Phylogeny	Characterization of two novel pentose-fermenting and GABA-producing species: Levilactobacillus tujiorum sp. nov. and Secundilactobacillus angelensis sp. nov. Isolated from a solid-state fermented zha-chili.	Zhang Z, Wang Y, Dong Y, Xiang F, Zhang Y, Zhang H, Sun Y, Guo Z	Syst Appl Microbiol	10.1016/j.syapm.2022.126344	2022	*

References

#8381

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19909

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29711

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26094 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76171

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408158.1 )

#26094

IJSEM 2903 2010 ( DOI 10.1099/ijs.0.019307-0 , PubMed 20097799 )

* These data were automatically processed and therefore are not curated

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Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 DSM 19909

Lactobacillus odoratitofui DSM 19909 = JCM 15043

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