Name: Lentilactobacillus parabuchneri 6E
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6541

Type strain:

Species: Lentilactobacillus parabuchneri

Strain Designation: 6E

Culture col. no.: DSM 5707, ATCC 49374, NCDO 2748, NCIB 8838, CCUG 32261, NCIMB 8838, CECT 5740, JCM 12493, BCRC 14743, CIP 103368, KCTC 3503, LMG 11457, NBRC 107865, VTT E-93503

Strain history: CIP <- 1989, NCFB <- 1984, M.E. Sharpe, reading, UK <- 1960, NCIB <- A.C. Hayward: strain 6E, Lactobacillus buchneri

NCBI tax ID(s): 152331 (species)

SI-ID 127919

LMG 11457, DSM 5707, NCDO 2748, ATCC 49374, CCUG 32261, CIP 103368, NCFB 2748, NCIMB 8838, JCM12493, NCIB 8838, CECT 5740, BCRC 14743, CCRC 14743, KCTC 3503, VTT E-93503

Special Collections

Other strains from Lentilactobacillus parabuchneri

Section

Lentilactobacillus parabuchneri 6E is an anaerobe, Gram-positive bacterium that was isolated from human saliva.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lentilactobacillus*
	Species	**Lentilactobacillus parabuchneri**
	Full Scientific Name (LPSN)	Lentilactobacillus parabuchneri (Farrow et al. 1989) Zheng et al. 2020

	Synonym	Lactobacillus ferintoshensis
	Synonym	Lactobacillus parabuchneri

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %94.034

[Ref.: #69480]	Motility	no Confidence in %90

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2300]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #2300]

Culture medium growth

[Ref.: #2300]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2300]

Culture medium composition

expand / minimize

[Ref.: #34251]

Culture medium

MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus

[Ref.: #34251]

Culture medium growth

[Ref.: #34251]

Culture medium composition

expand / minimize

[Ref.: #121542]

Culture medium

CIP Medium 41

[Ref.: #121542]

Culture medium growth

[Ref.: #121542]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2300]	growth	28 °C
[Ref.: #34251]	growth	30 °C
[Ref.: #50937]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #50937]	Oxygen tolerance	anaerobe
[Ref.: #50937]	Oxygen tolerance	microaerophile

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #2300]	Murein short key	A11.31
[Ref.: #2300]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #2300]	14238	-	-	-	-	+	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+/-	not determinedn.d.	+/-
[Ref.: #2300]	14976	-	-	-	-	+	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+/-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2300]	Sample type/isolated from	human saliva

[Ref.: #50937]	Sample type/isolated from	Human saliva
[Ref.: #50937]	Country	United Kingdom
[Ref.: #50937]	Country ISO 3 Code	GBR
[Ref.: #50937]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human saliva

[Ref.: #121542]	Sample type/isolated from	Human, Saliva
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Oral cavity and Airways	#Saliva

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC383822 (>99% sequence identity) for Lentilactobacillus from Microbeatlas

Aquatic Samples	1599
Soil Samples	1041
Animal Samples	7375
Plant Samples	556
Total Samples	10571

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2300]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121542]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus parabuchneri JCM 12493 gene for 16S ribosomal RNA, partial sequence	LC383822	1513	GenBank ENA	152331 tax ID
[Ref.: #20218]	Lactobacillus parabuchneri gene for 16S ribosomal RNA, partial sequence, strain: DSM 5707	AB370877	1497	GenBank ENA	152331 tax ID	*
[Ref.: #20218]	Lactobacillus parabuchneri strain DSM 5707 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	EU161610	521	GenBank ENA	152331 tax ID	*
[Ref.: #20218]	Lactobacillus parabuchneri gene for 16S ribosomal RNA, partial sequence	AB205056	1556	GenBank ENA	152331 tax ID	*
[Ref.: #20218]	Lactobacillus parabuchneri gene for 16S rRNA, partial sequence, strain: JCM 12493	AB289211	489	GenBank ENA	152331 tax ID	*
[Ref.: #20218]	Lactobacillus parabuchneri 16S rRNA gene, type strain: LMG 11457	AJ970317	1527	GenBank ENA	152331 tax ID	*
[Ref.: #20218]	Lactobacillus parabuchneri 16S ribosomal RNA gene, partial sequence	AY026751	1219	GenBank ENA	152331 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865	GCA_001435315	scaffold	GenBank ENA	1423784 tax ID
[Ref.: #66792]	Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865	GCA_001591885	contig	GenBank ENA	1423784 tax ID	*
[Ref.: #66792]	Lactobacillus parabuchneri DSM 5707 = NBRC 107865	1423784.4	wgs	PATRIC	1423784 tax ID	*
[Ref.: #66792]	Lactobacillus parabuchneri DSM 5707 = NBRC 107865	1423784.5	wgs	PATRIC	1423784 tax ID	*
[Ref.: #66792]	Lentilactobacillus parabuchneri DSM 5707	2667527643	draft	JGI IMG/M	1423784 tax ID	*
[Ref.: #66792]	Lentilactobacillus parabuchneri NBRC 107865	2731957671	draft	JGI IMG/M	1423784 tax ID	*

[Ref.: #2300]	GC-content	44.0 mol%
[Ref.: #67770]	GC-content	44 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	43.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus parabuchneri DSM 5707 = NBRC 107865 PATRIC: 1423784.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus parabuchneri DSM 5707 = NBRC 107865 PATRIC: 1423784.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	94.034	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	80.959	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.143	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.35	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.362	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #2300]

Culture collection no.

DSM 5707, ATCC 49374, NCDO 2748, NCIB 8838, CCUG 32261, NCIMB 8838, CECT 5740, JCM 12493, BCRC 14743, CIP 103368, KCTC 3503, LMG 11457, NBRC 107865, VTT E-93503

[Ref.: #76012]

SI-ID 127919

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lentilactobacillus laojiaonis sp. nov., isolated from the mud in a fermentation cellar for the production of Chinese liquor.	Zhao Q, Yang S, Bao G, Wang W, Miao L, Wang S, Shen C, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005349	2022	*

References

#2300

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5707

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34251 ; Curators of the CIP;
#50937 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32261

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76012

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127919.1 )

#121542 Collection of Institut Pasteur ; Curators of the CIP; CIP 103368
* These data were automatically processed and therefore are not curated

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Lactobacillus parabuchneri DSM 5707 = NBRC 107865

Lactobacillus parabuchneri DSM 5707 = NBRC 107865

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