Name: Liquorilactobacillus mali J12
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6482

Type strain:

Species: Liquorilactobacillus mali

Strain Designation: J12

Culture col. no.: DSM 20444, ATCC 27053, NCIB 10560, JCM 1116, BCRC 12940, BCRC 14057, CCM 2878, CCUG 30141, CCUG 32228, CIP 103142, KCTC 3596, LMG 6899, NBIMCC 3316, NBRC 102159, NCFB 2168, NCIMB 10560, NRIC 1692, NRRL B-4563, VKM B-1600, NCDO 2168

Strain history: CIP <- 1988, DSM <- ATCC, Lactobacillus yamanashiensis subsp. mali <- J.G. Carr: strain J 12, Lactobacillus mali

NCBI tax ID(s): 1618 (species)

SI-ID 92312

LMG 6899, ATCC 27053, CCM 2878, CCRC 12940, CIP 103142, DSM 20444, JCM 1116, LMG 11716, NCFB 2168, NCIMB 10560, NCIB 10560, CCUG 30141, NCDO 2168, CCUG 32228, CCRC 14057, VKM B-1600, KCTC 3596, NRRL B-4563, BCRC 12940, BCRC 14057, CCT 2570, NBIMCC 3316, NBRC 102159

Special Collections

Other strains from Liquorilactobacillus mali

Section

Liquorilactobacillus mali J12 is a mesophilic, Gram-positive bacterium that was isolated from apple juice from cider press.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Liquorilactobacillus*
	Species	**Liquorilactobacillus mali**
	Full Scientific Name (LPSN)	Liquorilactobacillus mali (Carr and Davies 1970) Zheng et al. 2020

	Synonym	Lactobacillus mali
	Synonym	Lactobacillus yamanashiensis
	Synonym	Lactobacillus yamanashiensis subsp. mali

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.178

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8816]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8816]

Culture medium growth

[Ref.: #8816]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8816]

Culture medium composition

expand / minimize

[Ref.: #34914]

Culture medium

MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus

[Ref.: #34914]

Culture medium growth

[Ref.: #34914]

Culture medium composition

expand / minimize

[Ref.: #120756]

Culture medium

CIP Medium 41

[Ref.: #120756]

Culture medium growth

[Ref.: #120756]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8816]	growth	30 °C
[Ref.: #34914]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8816]	Murein short key	A31
[Ref.: #8816]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8816]	15465	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	-	-	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-
[Ref.: #8816]	15464	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	-	-	+	+	-	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8816]	Sample type/isolated from	apple juice from cider press

[Ref.: #67770]	Sample type/isolated from	Apple juice from cider press

[Ref.: #120756]	Sample type/isolated from	Food, Apple juice from cider press
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC064888 (>99% sequence identity) for Liquorilactobacillus from Microbeatlas

Aquatic Samples	161
Soil Samples	144
Animal Samples	1322
Plant Samples	293
Total Samples	1920

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8816]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120756]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus mali gene for 16S ribosomal RNA, partial sequence, strain: JCM 1116	LC064888	1441	GenBank ENA	1046596 tax ID
[Ref.: #20218]	Lactobacillus mali gene for 16S rRNA, partial sequence, strain: NBRC 102159	AB326352	1485	GenBank ENA	1046596 tax ID	*
[Ref.: #20218]	Lactobacillus mali KCTC 3596 = DSM 20444 16S ribosomal RNA gene, partial sequence	M58824	1502	GenBank ENA	1046596 tax ID	*
[Ref.: #20218]	Lactobacillus mali gene for 16S rRNA, partial sequence, strain: JCM 1116	AB289195	633	GenBank ENA	1046596 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Liquorilactobacillus mali KCTC 3596 = DSM 20444	GCA_000260415	contig	GenBank ENA	1046596 tax ID
[Ref.: #67770]	Liquorilactobacillus mali KCTC 3596 = DSM 20444	GCA_000276905	contig	GenBank ENA	1046596 tax ID
[Ref.: #67770]	Liquorilactobacillus mali KCTC 3596 = DSM 20444	GCA_001436535	scaffold	GenBank ENA	1046596 tax ID
[Ref.: #66792]	Lactobacillus mali KCTC 3596 = DSM 20444	1046596.4	wgs	PATRIC	1046596 tax ID	*
[Ref.: #66792]	Liquorilactobacillus mali KCTC 3596	2534682326	draft	JGI IMG/M	1046596 tax ID	*
[Ref.: #66792]	Liquorilactobacillus mali KCTC 3596	2513237368	draft	JGI IMG/M	1046596 tax ID	*

[Ref.: #8816]	GC-content	36.9 mol%
[Ref.: #8816]	GC-content	32.5 mol%
[Ref.: #67770]	GC-content	36.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Liquorilactobacillus mali KCTC 3596 = DSM 20444 DSM 20444 NCBI: GCA_001436535.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	52	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus mali KCTC 3596 = DSM 20444 PATRIC: 1046596.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.178	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	82.504	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	72.66	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.194	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.808	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	56	no

Availability in culture collections External links

[Ref.: #8816]

Culture collection no.

DSM 20444, ATCC 27053, NCIB 10560, JCM 1116, BCRC 12940, BCRC 14057, CCM 2878, CCUG 30141, CCUG 32228, CIP 103142, KCTC 3596, LMG 6899, NBIMCC 3316, NBRC 102159, NCFB 2168, NCIMB 10560, NRIC 1692, NRRL B-4563, VKM B-1600, NCDO 2168

[Ref.: #75955]

SI-ID 92312

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Lactobacillus mali KCTC 3596.	Kim DW, Choi SH, Kang A, Nam SH, Kim DS, Kim RN, Kim A, Park HS	J Bacteriol	10.1128/JB.05686-11	2011	*
Phylogeny	Lactobacillus sucicola sp. nov., a motile lactic acid bacterium isolated from oak tree (Quercus sp.) sap.	Irisawa T, Okada S	Int J Syst Evol Microbiol	10.1099/ijs.0.006478-0	2009	*
Phylogeny	Lactobacillus oeni sp. nov., from wine.	Manes-Lazaro R, Ferrer S, Rossello-Mora R, Pardo I	Int J Syst Evol Microbiol	10.1099/ijs.0.007567-0	2009	*
Phylogeny	Lactobacillus hordei sp. nov., a bacteriocinogenic strain isolated from malted barley.	Rouse S, Canchaya C, van Sinderen D	Int J Syst Evol Microbiol	10.1099/ijs.0.65584-0	2008	*

References

#8816

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20444

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34914 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75955

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92312.1 )

#120756 Collection of Institut Pasteur ; Curators of the CIP; CIP 103142
* These data were automatically processed and therefore are not curated

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Liquorilactobacillus mali KCTC 3596 = DSM 20444 DSM 20444

Lactobacillus mali KCTC 3596 = DSM 20444

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Change proposal