Butyrivibrio hungatei (DSM 14810, ATCC BAA-456, JK 615)

Name: Butyrivibrio hungatei (DSM 14810, ATCC BAA-456, JK 615)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6351

Type strain

Strain Designation JK 615

Culture col. no. DSM 14810 ATCC BAA-456 JK 615

NCBI tax ID(s) 1121132 185008

Special Collections DSMZ

History <- J. Kopecny, Czech Academy of Sciences, Prague, Czech Republic; JK 615 <- J. Kopecny {1997} 2003, J. Kopecny, Prague, Czech Republic: strain JK615

Links

Butyrivibrio hungatei JK 615 is an anaerobe bacterium that was isolated from rumen fluid of sheep on a pasture.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 100571

ATCC BAA-456,DSM 14810,CIP 107890

@ref 20215

Last LPSN update 2026-02-09 11:19:11

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Butyrivibrio

Species Butyrivibrio hungatei

Full scientific name Butyrivibrio hungatei Kopecný et al. 2003

BacDive ID	Other strains from **Butyrivibrio hungatei** (2)	Type strain
6350	B. hungatei DSM 10295, NCFB 2398
176811	B. hungatei MB2003, DSM 120820

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5557	RUMEN BACTERIA MEDIUM (DSMZ Medium 330)		Medium recipe at MediaDive	Name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330) Composition: Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l D-Glucose 0.5 g/l Yeast extract 0.5 g/l Maltose 0.5 g/l Cellobiose 0.5 g/l Starch 0.5 g/l Glycerol 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH None Distilled water
33177	MEDIUM 20 - for Anaerobic bacteria			Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)

Culture temp

@ref	Growth	Type	Temperature (°C)
5557	positive	growth	40
33177	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5557	anaerobe
125438	anaerobe	95.866
125439	anaerobe	99.2

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	teichoic acid biosynthesis	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	starch degradation	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	vitamin E metabolism	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	vitamin B1 metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	myo-inositol biosynthesis	90	9 of 10
66794	d-mannose degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	purine metabolism	72.34	68 of 94
66794	degradation of hexoses	72.22	13 of 18
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	photosynthesis	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	polyamine pathway	69.57	16 of 23
66794	phenylalanine metabolism	69.23	9 of 13
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	oxidative phosphorylation	65.93	60 of 91
66794	methionine metabolism	65.38	17 of 26
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	d-xylose degradation	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	methylglyoxal degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	non-pathway related	55.26	21 of 38
66794	tryptophan metabolism	55.26	21 of 38
66794	metabolism of disaccharids	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	degradation of sugar acids	52	13 of 25
66794	histidine metabolism	51.72	15 of 29
66794	alanine metabolism	51.72	15 of 29
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	ketogluconate metabolism	50	4 of 8
66794	selenocysteine biosynthesis	50	3 of 6
66794	cysteine metabolism	50	9 of 18
66794	ethanol fermentation	50	1 of 2
66794	tetrahydrofolate metabolism	50	7 of 14
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	citric acid cycle	42.86	6 of 14
66794	propanol degradation	42.86	3 of 7
66794	lipid metabolism	41.94	13 of 31
66794	arginine metabolism	41.67	10 of 24
66794	O-antigen biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	urea cycle	38.46	5 of 13
66794	pentose phosphate pathway	36.36	4 of 11
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	flavin biosynthesis	33.33	5 of 15
66794	enterobactin biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	vitamin B12 metabolism	32.35	11 of 34
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	coenzyme M biosynthesis	30	3 of 10
66794	glycine metabolism	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	25	2 of 8
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	carotenoid biosynthesis	22.73	5 of 22
66794	ascorbate metabolism	22.73	5 of 22
66794	nitrate assimilation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Grassland
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen
#Host Body Product	#Fluids	#Rumen fluid

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5557	rumen fluid of sheep on a pasture	Central Bohemia, Mnichovice	Czech Republic	CZE	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ428553 (>99% sequence identity) for Butyrivibrio hungatei from Microbeatlas

Aquatic Samples	5
Soil Samples	9
Animal Samples	606
Plant Samples	11
Total Samples	631

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5557	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2582580726 annotated assembly for Butyrivibrio hungatei DSM 14810	scaffold	GCA_900143205	1121132.3	2582580726	1121132	74.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5557	Butyrivibrio hungatei partial 16S rRNA gene, strain JK 615	AJ428553	1475		185008

GC content

@ref	GC-content (mol%)	Method
5557	44.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Butyrivibrio hungatei DSM 14810
NCBI: GCA_900143205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.20	no
125439	gram_stain	BacteriaNetⓘ	variable	81.80	no
125439	motility	BacteriaNetⓘ	yes	70.00	no
125439	spore_formation	BacteriaNetⓘ	yes	60.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Butyrivibrio hungatei DSM 14810 DSM 14810
NCBI: GCA_900143205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	64.03	no
125438	anaerobic	anaerobicⓘ	yes	95.87	no
125438	aerobic	aerobicⓘ	no	97.08	yes
125438	spore-forming	spore-formingⓘ	no	50.20	no
125438	thermophilic	thermophileⓘ	no	90.56	no
125438	flagellated	motile2+ⓘ	yes	71.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615^T) and Butyrivibrio fibrisolvens DSM 3071 (D1^T).	Berner K, Zoza-Veloz M, Nolan M, Graham D, Ivanova N, Seshadri R, Spring S, Escobar M.	Microbiol Resour Announc	10.1128/mra.00517-24	2024
Metabolism	Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering.	Honan MC, Greenwood SL.	Sci Rep	10.1038/s41598-020-59974-5	2020
	Characterization of antibiotic resistance genes in the species of the rumen microbiota.	Sabino YNV, Santana MF, Oyama LB, Santos FG, Moreira AJS, Huws SA, Mantovani HC.	Nat Commun	10.1038/s41467-019-13118-0	2019
Phylogeny	Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen.	Kopecny J, Zorec M, Mrazek J, Kobayashi Y, Marinsek-Logar R	Int J Syst Evol Microbiol	10.1099/ijs.0.02345-0	2003

References

#5557	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14810
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33177	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Butyrivibrio hungatei (DSM 14810, ATCC BAA-456, JK 615)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900143205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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