Strain identifier
BacDive ID: 6351
Type strain: 
Species: Butyrivibrio hungatei
Strain Designation: JK 615
Strain history: 2003, J. Kopecny, Prague, Czech Republic: strain JK615
NCBI tax ID(s): 1121132 (strain), 185008 (species)
version 8.1 (current version)
General
@ref: 5557
BacDive-ID: 6351
DSM-Number: 14810
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Butyrivibrio hungatei JK 615 is an anaerobe, thermophilic bacterium that was isolated from rumen fluid of sheep on a pasture.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121132 | strain |
| 185008 | species |
strain history
| @ref | history |
|---|---|
| 5557 | <- J. Kopecny, Czech Academy of Sciences, Prague, Czech Republic; JK 615 <- J. Kopecny {1997} |
| 33177 | 2003, J. Kopecny, Prague, Czech Republic: strain JK615 |
doi: 10.13145/bacdive6351.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Butyrivibrio
- species: Butyrivibrio hungatei
- full scientific name: Butyrivibrio hungatei Kopecný et al. 2003
@ref: 5557
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Butyrivibrio
species: Butyrivibrio hungatei
full scientific name: Butyrivibrio hungatei Kopecný et al. 2003
strain designation: JK 615
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5557 | RUMEN BACTERIA MEDIUM (DSMZ Medium 330) | yes | https://mediadive.dsmz.de/medium/330 | Name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330) Composition: Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l D-Glucose 0.5 g/l Yeast extract 0.5 g/l Maltose 0.5 g/l Cellobiose 0.5 g/l Starch 0.5 g/l Glycerol 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH None Distilled water |
| 33177 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5557 | positive | growth | 40 | thermophilic |
| 33177 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5557
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5557
- sample type: rumen fluid of sheep on a pasture
- geographic location: Central Bohemia, Mnichovice
- country: Czech Republic
- origin.country: CZE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Grassland |
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body-Site | #Organ | #Rumen |
| #Host Body Product | #Fluids | #Rumen fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_297.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_85;96_205;97_223;98_252;99_297&stattab=map
- Last taxonomy: Butyrivibrio hungatei
- 16S sequence: AJ428553
- Sequence Identity:
- Total samples: 631
- soil counts: 9
- aquatic counts: 5
- animal counts: 606
- plant counts: 11
Safety information
risk assessment
- @ref: 5557
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5557
- description: Butyrivibrio hungatei partial 16S rRNA gene, strain JK 615
- accession: AJ428553
- length: 1475
- database: ena
- NCBI tax ID: 185008
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Butyrivibrio hungatei DSM 14810 | GCA_900143205 | scaffold | ncbi | 1121132 |
| 66792 | Butyrivibrio hungatei DSM 14810 | 1121132.3 | wgs | patric | 1121132 |
| 66792 | Butyrivibrio hungatei DSM 14810 | 2582580726 | draft | img | 1121132 |
GC content
- @ref: 5557
- GC-content: 44.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 82.499 | no |
| flagellated | no | 59.7 | no |
| gram-positive | yes | 67.873 | no |
| anaerobic | yes | 99.339 | no |
| aerobic | no | 99.282 | yes |
| halophile | no | 90.293 | no |
| spore-forming | yes | 64.067 | no |
| thermophile | no | 90.362 | no |
| glucose-util | yes | 86.606 | no |
| glucose-ferment | yes | 79.784 | no |
External links
@ref: 5557
culture collection no.: DSM 14810, ATCC BAA 456
straininfo link
- @ref: 75825
- straininfo: 100571
literature
- topic: Phylogeny
- Pubmed-ID: 12656174
- title: Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen.
- authors: Kopecny J, Zorec M, Mrazek J, Kobayashi Y, Marinsek-Logar R
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02345-0
- year: 2003
- mesh: Animals, Base Composition, Base Sequence, Butyrates/*metabolism, Cattle, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Fermentation, Genetic Variation, Genotype, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/genetics/isolation & purification/*metabolism, Microscopy, Electron, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rumen/microbiology, Sheep
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5557 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14810) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14810 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 33177 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5451 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75825 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100571.1 | StrainInfo: A central database for resolving microbial strain identifiers |