Name: Janibacter hoylei PVAS-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6267

Type strain:

Species: Janibacter hoylei

Strain Designation: PVAS-1

Culture col. no.: DSM 21601, CCUG 56714, MTCC 8307, NBRC 109086, JCM 17930

Strain history: MTCC 8307 <-- S. Shivaji PVAS-1.

NCBI tax ID(s): 1210046 (strain), 364298 (species)

SI-ID 408695

CCUG 56714

Section

Janibacter hoylei PVAS-1 is an aerobe, mesophilic bacterium that was isolated from air from an altitude of 40–41.4 km.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Janibacter*
	Species	**Janibacter hoylei**
	Full Scientific Name (LPSN)	Janibacter hoylei Shivaji et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #61066]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #61066]			growth	37 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #61066]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61066]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15838]	Sample type/isolated from	air from an altitude of 40–41.4 km
[Ref.: #15838]	Geographic location (country and/or sea, region)	Hyderabad
[Ref.: #15838]	Country	India
[Ref.: #15838]	Country ISO 3 Code	IND
[Ref.: #15838]	Continent	Asia

[Ref.: #61066]	Sample type/isolated from	Air
[Ref.: #61066]	Sampling date	2005-04-01
[Ref.: #61066]	Geographic location (country and/or sea, region)	Hyderabad
[Ref.: #61066]	Country	India
[Ref.: #61066]	Country ISO 3 Code	IND
[Ref.: #61066]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air sample at an altitude of 40-41.4 km
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hyderabad
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

#Outdoor Air

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15838]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15838]	Janibacter hoylei strain PVAS-1 16S ribosomal RNA gene, partial sequence	DQ317608	1196	ENA	1210046 tax ID
[Ref.: #20218]	Janibacter hoylei partial 16S rRNA gene, type strain DSM 21601T	FR749912	1513	ENA	1210046 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Janibacter hoylei PVAS-1	GCA_000297495	contig	GenBank	1210046 tax ID
[Ref.: #67770]	Janibacter hoylei PVAS-1	GCA_004025845	contig	GenBank	1210046 tax ID
[Ref.: #66792]	Janibacter hoylei PVAS-1	1210046.12	wgs	PATRIC	1210046 tax ID	*
[Ref.: #66792]	Janibacter hoylei PVAS-1	1210046.3	wgs	PATRIC	1210046 tax ID	*
[Ref.: #66792]	Janibacter hoylei PVAS-1	2531839443	draft	JGI IMG/M	1210046 tax ID	*

[Ref.: #15838]	GC-content	72.8 mol%
[Ref.: #67770]	GC-content	72.8 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	72.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	71.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Janibacter hoylei PVAS-1 PATRIC: 1210046.12
[Ref.: #69480]	motile	no	96.473	no
[Ref.: #69480]	gram-positive	yes	92.794	no
[Ref.: #69480]	anaerobic	no	97.476	yes
[Ref.: #69480]	aerobic	yes	92.865	yes
[Ref.: #69480]	halophile	no	91.718	no
[Ref.: #69480]	spore-forming	no	88.499	no
[Ref.: #69480]	glucose-util	yes	87.843	no
[Ref.: #69480]	flagellated	no	98.245	no
[Ref.: #69480]	thermophile	no	97.591	yes
[Ref.: #69480]	glucose-ferment	no	89.309	no

Availability in culture collections External links

[Ref.: #15838]

Culture collection no.

DSM 21601, CCUG 56714, MTCC 8307, NBRC 109086, JCM 17930

[Ref.: #75744]

SI-ID 408695

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of Janibacter hoylei MTCC8307, isolated from the stratospheric air.	Pawar SP, Dhotre DP, Shetty SA, Chowdhury SP, Chaudhari BL, Shouche YS	J Bacteriol	10.1128/JB.01728-12	2012	*
Phylogeny	Janibacter hoylei sp. nov., Bacillus isronensis sp. nov. and Bacillus aryabhattai sp. nov., isolated from cryotubes used for collecting air from the upper atmosphere.	Shivaji S, Chaturvedi P, Begum Z, Pindi PK, Manorama R, Padmanaban DA, Shouche YS, Pawar S, Vaishampayan P, Dutt CB, Datta GN, Manchanda RK, Rao UR, Bhargava PM, Narlikar JV	Int J Syst Evol Microbiol	10.1099/ijs.0.002527-0	2009	*

References

#15838

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21601

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#61066 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56714

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75744

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408695.1 )

* These data were automatically processed and therefore are not curated

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