Janibacter corallicola (DSM 18906, JCM 15571, MBIC 08265)

Name: Janibacter corallicola (DSM 18906, JCM 15571, MBIC 08265)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6266

Type strain

Strain Designation 04PA2-C05-61

Culture col. no. DSM 18906 JCM 15571 MBIC 08265 NBRC 107790 04PA2-C05-61

NCBI tax ID(s) 1216969 415212

Special Collections DSMZ JCM

History DSMZ <- Hiroaki Kasai <- M. Hirose, 04PA2-Co5-61 JCM <-- DSM 18906 <-- H. Kasai <-- M. Hirose 04PA2-Co5-61.

Links

Janibacter corallicola 04PA2-C05-61 is a bacterium that was isolated from hard coral .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403334

NBRC 107790,JCM 15571,DSM 18906

@ref 20215

Last LPSN update 2026-05-29 08:26:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Intrasporangiaceae

Genus Janibacter

Species Janibacter corallicola

Full scientific name Janibacter corallicola Kageyama et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	90.432
125438		94
125438	positive	92.296

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7615	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7615	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	93.655

Observation

67770

Observationquinones: MK-8(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Cnidaria (Corals)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
7615	hard coral (Acropora gemmifera)	Palau	Palau	PLW	Australia and Oceania
67770	Hard coral (Acropora gemmifera) at depths of 3-5 m in Angauru Coral Garden		Palau	PLW	Australia and Oceania	Acropora gemmifera

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7615	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM157096v1 assembly for Janibacter corallicola NBRC 107790	contig	GCA_001570965	1216969.3	2731957612	1216969	53.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7615	Janibacter corallicola gene for 16S rRNA, partial sequence, strain: 04PA2-Co5-61	AB286023	1473		415212

GC content

@ref	GC-content (mol%)	Method
7615	70
67770	70-71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM157096v1 assembly for Janibacter corallicola NBRC 107790
BV-BRC: 1216969.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.66	no
125439	gram_stain	BacteriaNetⓘ	positive	90.43	no
125439	motility	BacteriaNetⓘ	no	61.33	no
125439	spore_formation	BacteriaNetⓘ	no	87.25	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Janibacter corallicola NBRC 107790
PATRIC: 1216969.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.30	no
125438	anaerobic	anaerobicⓘ	no	95.61	no
125438	spore-forming	spore-formingⓘ	no	68.54	no
125438	aerobic	aerobicⓘ	yes	83.08	no
125438	thermophilic	thermophileⓘ	no	93.50	yes
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Insights into the Cultured Bacterial Fraction of Corals.	Sweet M, Villela H, Keller-Costa T, Costa R, Romano S, Bourne DG, Cardenas A, Huggett MJ, Kerwin AH, Kuek F, Medina M, Meyer JL, Muller M, Pollock FJ, Rappe MS, Sere M, Sharp KH, Voolstra CR, Zaccardi N, Ziegler M, Peixoto R.	mSystems	10.1128/msystems.01249-20	2021
Phylogeny	Janibacter corallicola sp. nov., isolated from coral in Palau.	Kageyama A, Takahashi Y, Yasumoto-Hirose M, Kasai H, Shizuri Y, Omura S	J Gen Appl Microbiol	10.2323/jgam.53.185	2007

References

#7615	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18906
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Janibacter corallicola (DSM 18906, JCM 15571, MBIC 08265)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001570965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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