Name: Sulfuriferula plumbiphila Gro7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6150

Type strain:

Species: Sulfuriferula plumbiphila

Strain Designation: Gro7

Culture col. no.: DSM 6690, NBRC 107929

Strain history: <- E. Drobner and K. O. Stetter, Univ. Regensburg, Germany; Gro7 <- H. Huber {1984}

NCBI tax ID(s): 171865 (species)

SI-ID 48269

DSM 6690

Section

Sulfuriferula plumbiphila Gro7 is a mesophilic, motile bacterium that was isolated from uranium mine.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Nitrosomonadales*
	Family	*Sulfuricellaceae*
	Genus	*Sulfuriferula*
	Species	**Sulfuriferula plumbiphila**
	Full Scientific Name (LPSN)	Sulfuriferula plumbiphila corrig. Watanabe et al. 2015

	Synonym	"Thiobacillus* plumbophilus"*
	Synonym	Sulfuriferula plumbophilus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %98.267

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2771]

Culture medium

SULFURIFERULA MEDIUM (DSMZ Medium 561)

[Ref.: #2771]

Culture medium growth

[Ref.: #2771]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2771]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2771]			growth	30 °C

[Ref.: #2771]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2771]	Sample type/isolated from	uranium mine
[Ref.: #2771]	Geographic location (country and/or sea, region)	Großschloppen
[Ref.: #2771]	Country	Germany
[Ref.: #2771]	Country ISO 3 Code	DEU
[Ref.: #2771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Other

#Mine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2771]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2771]	Sulfuriferula plumbiphila strain Gro7 16S ribosomal RNA, partial sequence	NR_114805	1469	GenBank	171865 tax ID
[Ref.: #20218]	Thiobacillus plumbophilus 16S rRNA gene, strain DSM 6690	AJ316618	1469	ENA	171865 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfuriferula plumbiphila Gro7	GCA_009938015	complete	GenBank	171865 tax ID	*
[Ref.: #66792]	Sulfuriferula plumbiphila NBRC 107929	GCA_007992375	contig	GenBank	171865 tax ID	*
[Ref.: #66792]	Sulfuriferula plumbiphila strain Gro7	171865.4	complete	PATRIC	171865 tax ID	*
[Ref.: #66792]	Sulfuriferula plumbiphila strain NBRC 107929	171865.3	wgs	PATRIC	171865 tax ID	*
[Ref.: #66792]	Sulfuriferula plumbiphila Gro7	2884029866	complete	JGI IMG/M	171865 tax ID	*
[Ref.: #66792]	Sulfuriferula plumbiphila NBRC 107929	2891234691	draft	JGI IMG/M	171865 tax ID	*

[Ref.: #2771]

GC-content

59.1 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sulfuriferula plumbiphila Gro7 NCBI: GCA_009938015.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfuriferula plumbiphila Gro7 NCBI: GCA_009938015.1
[Ref.: #69480]	motile	yes	91.602	no
[Ref.: #69480]	flagellated	yes	60.148	no
[Ref.: #69480]	gram-positive	no	98.693	no
[Ref.: #69480]	anaerobic	no	96.01	no
[Ref.: #69480]	aerobic	no	71.359	no
[Ref.: #69480]	halophile	no	94.311	no
[Ref.: #69480]	spore-forming	no	92.928	no
[Ref.: #69480]	glucose-util	no	59.642	no
[Ref.: #69480]	thermophile	no	96.636	yes
[Ref.: #69480]	glucose-ferment	no	88.508	no

Availability in culture collections External links

[Ref.: #2771]

Culture collection no.

DSM 6690, NBRC 107929

[Ref.: #75637]

SI-ID 48269

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.	Watanabe T, Kojima H, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.000129	2015	*
Metabolism	Thiobacillus plumbophilus spec. nov., a novel galena and hydrogen oxidizer.	Drobner E, Huber H, Rachel R, Stetter KO	Arch Microbiol	10.1007/BF00245152	1992	*
Phylogeny	Sulfuricella denitrificans gen. nov., sp. nov., a sulfur-oxidizing autotroph isolated from a freshwater lake.	Kojima H, Fukui M	Int J Syst Evol Microbiol	10.1099/ijs.0.016980-0	2010	*

References

#2771

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6690

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75637

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48269.1 )

* These data were automatically processed and therefore are not curated

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