Strain identifier

BacDive ID: 6150

Type strain: Yes

Species: Sulfuriferula plumbiphila

Strain Designation: Gro7

Strain history: <- E. Drobner and K. O. Stetter, Univ. Regensburg, Germany; Gro7 <- H. Huber {1984}

NCBI tax ID(s): 171865 (species)

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General

@ref: 2771

BacDive-ID: 6150

DSM-Number: 6690

keywords: genome sequence, 16S sequence, Bacteria, motile

description: Sulfuriferula plumbiphila Gro7 is a motile bacterium that was isolated from uranium mine.

NCBI tax id

  • NCBI tax id: 171865
  • Matching level: species

strain history

  • @ref: 2771
  • history: <- E. Drobner and K. O. Stetter, Univ. Regensburg, Germany; Gro7 <- H. Huber {1984}

doi: 10.13145/bacdive6150.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Nitrosomonadales
  • family: Sulfuricellaceae
  • genus: Sulfuriferula
  • species: Sulfuriferula plumbiphila
  • full scientific name: Sulfuriferula plumbiphila corrig. Watanabe et al. 2015

  • synonyms

    @refsynonym
    20215Thiobacillus plumbophilus
    20215Sulfuriferula plumbophilus

@ref: 2771

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Hydrogenophilales

family: Sulfuricellaceae

genus: Sulfuriferula

species: Sulfuriferula plumbiphila

full scientific name: Sulfuriferula plumbiphila Watanabe et al. 2016

strain designation: Gro7

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes91.602
6948098.693negative

Culture and growth conditions

culture medium

  • @ref: 2771
  • name: SULFURIFERULA MEDIUM (DSMZ Medium 561)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/561
  • composition: Name: SULFURIFERULA MEDIUM (DSMZ Medium 561) Composition: MgCl2 x 6 H2O 2.70936 g/l NH4Cl 1.23153 g/l KCl 0.295566 g/l K2HPO4 0.137931 g/l MgSO4 x 7 H2O 0.0295567 g/l Nitrilotriacetic acid 0.0147783 g/l NaCl 0.00985222 g/l MnSO4 x H2O 0.00492611 g/l NiCl2 x 6 H2O 0.00492611 g/l ZnSO4 x 7 H2O 0.0017734 g/l CoSO4 x 7 H2O 0.0017734 g/l FeSO4 x 7 H2O 0.000985222 g/l CaCl2 x 2 H2O 0.000985222 g/l Na2WO4 x 2 H2O 0.000492611 g/l AlK(SO4)2 x 12 H2O 0.000197044 g/l CuSO4 x 5 H2O 9.85222e-05 g/l H3BO3 9.85222e-05 g/l Na2MoO4 x 2 H2O 9.85222e-05 g/l Na2SeO3 x 5 H2O 2.95566e-06 g/l Distilled water

culture temp

  • @ref: 2771
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no92.928

Isolation, sampling and environmental information

isolation

  • @ref: 2771
  • sample type: uranium mine
  • geographic location: Großschloppen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Other
  • Cat3: #Mine

Safety information

risk assessment

  • @ref: 2771
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Thiobacillus plumbophilus 16S rRNA gene, strain DSM 6690AJ3166181469nuccore171865
2771Sulfuriferula plumbiphila strain Gro7 16S ribosomal RNA, partial sequenceNR_1148051469nuccore171865

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfuriferula plumbiphila Gro7GCA_009938015completencbi171865
66792Sulfuriferula plumbiphila NBRC 107929GCA_007992375contigncbi171865
66792Sulfuriferula plumbiphila strain Gro7171865.4completepatric171865
66792Sulfuriferula plumbiphila strain NBRC 107929171865.3wgspatric171865
66792Sulfuriferula plumbiphila Gro72884029866completeimg171865
66792Sulfuriferula plumbiphila NBRC 1079292891234691draftimg171865

GC content

  • @ref: 2771
  • GC-content: 59.1
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.602no
flagellatedyes60.148no
gram-positiveno98.693no
anaerobicno96.01no
aerobicno71.359no
halophileno94.311no
spore-formingno92.928no
glucose-utilno59.642no
thermophileno96.636yes
glucose-fermentno88.508no

External links

@ref: 2771

culture collection no.: DSM 6690, NBRC 107929

straininfo link

  • @ref: 75637
  • straininfo: 48269

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism1510552Thiobacillus plumbophilus spec. nov., a novel galena and hydrogen oxidizer.Drobner E, Huber H, Rachel R, Stetter KOArch Microbiol10.1007/BF002451521992Base Composition, Culture Media, Drug Resistance, Microbial, Hydrogen/*metabolism, Hydrogen Sulfide/*metabolism, Hydrogen-Ion Concentration, Lead/*metabolism, Mining, Quinones/analysis, Sequence Homology, Nucleic Acid, Species Specificity, Sulfides/*metabolism, Thiobacillus/isolation & purification/*metabolism/ultrastructure, Uranium, Water MicrobiologyPhylogeny
Phylogeny20081014Sulfuricella denitrificans gen. nov., sp. nov., a sulfur-oxidizing autotroph isolated from a freshwater lake.Kojima H, Fukui MInt J Syst Evol Microbiol10.1099/ijs.0.016980-02010Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fresh Water/microbiology, Japan, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfates/metabolism, Sulfur/metabolism, Thiosulfates/metabolismMetabolism
Phylogeny25701846Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.Watanabe T, Kojima H, Fukui MInt J Syst Evol Microbiol10.1099/ijs.0.0001292015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fresh Water/microbiology, Genes, Bacterial, Geologic Sediments/*microbiology, Japan, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thiobacillus/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2771Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6690)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6690
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75637Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48269.1StrainInfo: A central database for resolving microbial strain identifiers