Name: Heliomicrobium undosum BG29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6124

Type strain:

Species: Heliomicrobium undosum

Strain Designation: BG29

Culture col. no.: DSM 13378

Strain history: <- I. A. Bryantseva and V. M. Gorlenko; BG 29

NCBI tax ID(s): 121734 (species)

SI-ID 49460

DSM 13378

Section

Heliomicrobium undosum BG29 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from microbial mat of Garga thermal spring.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Heliobacteriaceae*
	Genus	*Heliomicrobium*
	Species	**Heliomicrobium undosum**
	Full Scientific Name (LPSN)	Heliomicrobium undosum (Bryantseva et al. 2001) Kyndt et al. 2021

Synonym

Heliobacterium undosum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %91.135

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5017]

Culture medium

HELIOBACTERIUM CHLORUM MEDIUM (DSMZ Medium 370)

[Ref.: #5017]

Culture medium growth

[Ref.: #5017]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5017]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5017]			growth	30 °C

[Ref.: #5017]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5017]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.559

[Ref.: #69480]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5017]	Sample type/isolated from	microbial mat of Garga thermal spring
[Ref.: #5017]	Geographic location (country and/or sea, region)	Siberia, Buryatia
[Ref.: #5017]	Country	Russia
[Ref.: #5017]	Country ISO 3 Code	RUS
[Ref.: #5017]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Microbial community	#Microbial mat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF249679 (>99% sequence identity) for Heliobacterium undosum subclade from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5017]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Heliobacterium undosum 16S ribosomal RNA, partial sequence	AF249679	1499	ENA	121734 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Heliomicrobium undosum DSM 13378	GCA_009877425	contig	GenBank	121734 tax ID	*
[Ref.: #66792]	Heliobacterium undosum strain DSM 13378	121734.5	wgs	PATRIC	121734 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Heliobacterium undosum strain DSM 13378 PATRIC: 121734.5
[Ref.: #69481]	spore-forming	yes	68	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Heliobacterium undosum strain DSM 13378 PATRIC: 121734.5
[Ref.: #69480]	motile	yes	85.461	no
[Ref.: #69480]	gram-positive	no	84.462	no
[Ref.: #69480]	anaerobic	yes	99.183	yes
[Ref.: #69480]	aerobic	no	96.563	yes
[Ref.: #69480]	halophile	no	96.835	no
[Ref.: #69480]	spore-forming	yes	93.482	no
[Ref.: #69480]	glucose-util	yes	72.493	no
[Ref.: #69480]	flagellated	no	68.817	no
[Ref.: #69480]	thermophile	no	98.199	yes
[Ref.: #69480]	glucose-ferment	no	83.154	no

Availability in culture collections External links

[Ref.: #5017]

Culture collection no.

DSM 13378

[Ref.: #75611]

SI-ID 49460

References

#5017

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13378

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75611

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49460.1 )

* These data were automatically processed and therefore are not curated

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Heliobacterium undosum strain DSM 13378

Heliobacterium undosum strain DSM 13378

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