Herpetosiphon aurantiacus (DSM 785, ATCC 23779, CCUG 48726)

Name: Herpetosiphon aurantiacus (DSM 785, ATCC 23779, CCUG 48726)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6125

Type strain

Strain Designation 114-95

Culture col. no. DSM 785 ATCC 23779 CCUG 48726 114-95 HKI 0542 1 more

NCBI tax ID(s) 316274 65

Special Collections DSMZ CCUG JMRC

History DSMZ <- H. Reichenbach <- ATCC <- J.G. Holt, 114-95

Links

Herpetosiphon aurantiacus 114-95 is an aerobe bacterium that was isolated from lake water.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49472

ATCC 23779,DSM 785,CCUG 48726,HAMBI 1968

@ref 20215

Last LPSN update 2026-05-29 08:26:19

Domain Bacteria

Phylum Chloroflexota

Class Chloroflexia

Order Herpetosiphonales

Family Herpetosiphonaceae

Genus Herpetosiphon

Species Herpetosiphon aurantiacus

Full scientific name Herpetosiphon aurantiacus Holt and Lewin 1968 (Approved Lists 1980)

BacDive ID	Other strains from **Herpetosiphon aurantiacus** (2)	Type strain
6126	H. aurantiacus 1, Hp g8, DSM 6205
6127	H. aurantiacus 2, Hp g9, DSM 6206

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	94.798

Colony morphology

58307

Incubation period5 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
443	CY-AGAR (DSMZ Medium 67)		Medium recipe at MediaDive	Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
443	positive	growth	30
58307	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
58307	aerobe
125439	obligate aerobe	96.718

Spore formation

@ref	Spore formation	Confidence
125439		99.517

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	gluconeogenesis	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	kanosamine biosynthesis II	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	phenylalanine metabolism	100	13 of 13
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	glycine betaine biosynthesis	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	denitrification	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	sulfopterin metabolism	100	4 of 4
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	heme metabolism	92.86	13 of 14
66794	vitamin B1 metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	purine metabolism	78.72	74 of 94
66794	d-mannose degradation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	citric acid cycle	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	oxidative phosphorylation	71.43	65 of 91
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tryptophan metabolism	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	cysteine metabolism	66.67	12 of 18
66794	lysine metabolism	66.67	28 of 42
66794	cyanate degradation	66.67	2 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	lipid metabolism	64.52	20 of 31
66794	tyrosine metabolism	64.29	9 of 14
66794	metabolism of disaccharids	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	Entner Doudoroff pathway	60	6 of 10
66794	coenzyme M biosynthesis	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	alanine metabolism	58.62	17 of 29
66794	arginine metabolism	58.33	14 of 24
66794	propanol degradation	57.14	4 of 7
66794	degradation of pentoses	57.14	16 of 28
66794	nitrate assimilation	55.56	5 of 9
66794	degradation of hexoses	55.56	10 of 18
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	ascorbate metabolism	50	11 of 22
66794	quinate degradation	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	vitamin B12 metabolism	50	17 of 34
66794	biotin biosynthesis	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	catecholamine biosynthesis	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	vitamin E metabolism	50	2 of 4
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	lipid A biosynthesis	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	3-chlorocatechol degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	bacilysin biosynthesis	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	carnitine metabolism	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	octane oxidation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	ginsenoside metabolism	25	4 of 16
66794	CMP-KDO biosynthesis	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18
66794	chlorophyll metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
443	lake water		Minnesota, Birch Lake	USA	USA	North America
58307	Slimy coating of Chara sp.	1961	Minnesota,Birch Lake	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
443	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1856v1 assembly for Herpetosiphon aurantiacus DSM 785	complete	GCA_000018565	316274.7	2508501111	316274	72.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	H.aurantiacus 16S ribosomal RNA	M34117	1484		65

GC content

443

GC-content (mol%)48.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1856v1 assembly for Herpetosiphon aurantiacus DSM 785
BV-BRC: 316274.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.72	no
125439	gram_stain	BacteriaNetⓘ	negative	94.80	no
125439	motility	BacteriaNetⓘ	yes	46.41	no
125439	spore_formation	BacteriaNetⓘ	no	99.52	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Herpetosiphon aurantiacus DSM 785 -
NCBI: GCA_000018565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	60.52	no
125438	anaerobic	anaerobicⓘ	no	90.98	yes
125438	aerobic	aerobicⓘ	yes	78.88	no
125438	spore-forming	spore-formingⓘ	yes	59.13	no
125438	thermophilic	thermophileⓘ	no	82.64	yes
125438	flagellated	motile2+ⓘ	no	70.91	no

Literature

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	Unusual sulfonolipids are characteristic of the Cytophaga-Flexibacter group.	Godchaux W, Leadbetter ER.	J Bacteriol	10.1128/jb.153.3.1238-1246.1983	1983
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
	Herpetopanone, a diterpene from Herpetosiphon aurantiacus discovered by isotope labeling.	Pan X, Domin N, Schieferdecker S, Kage H, Roth M, Nett M	Beilstein J Org Chem	10.3762/bjoc.13.242	2017
Metabolism	Identification of a new diterpene biosynthetic gene cluster that produces O-methylkolavelool in Herpetosiphon aurantiacus.	Nakano C, Oshima M, Kurashima N, Hoshino T	Chembiochem	10.1002/cbic.201402652	2015
Phylogeny	Identification and characterization of cellobiose 2-epimerases from various aerobes.	Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H	Biosci Biotechnol Biochem	10.1271/bbb.120742	2013
Genetics	Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).	Kiss H, Nett M, Domin N, Martin K, Maresca JA, Copeland A, Lapidus A, Lucas S, Berry KW, Glavina Del Rio T, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Detter JC, Schmutz J, Brettin T, Land M, Hauser L, Kyrpides NC, Ivanova N, Goker M, Woyke T, Klenk HP, Bryant DA	Stand Genomic Sci	10.4056/sigs.2194987	2011
Genetics	Identification of a novel two-peptide lantibiotic, lichenicidin, following rational genome mining for LanM proteins.	Begley M, Cotter PD, Hill C, Ross RP	Appl Environ Microbiol	10.1128/AEM.00730-09	2009
Phylogeny	Herpetosiphon gulosus sp. nov., a filamentous predatory bacterium isolated from sandy soil and Herpetosiphon giganteus sp. nov., nom. rev.	Pan X, Kage H, Martin K, Nett M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002141	2017

References

#443	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 785
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#58307	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48726
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Herpetosiphon aurantiacus (DSM 785, ATCC 23779, CCUG 48726)

Name and taxonomic classification

Morphology

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