Name: Halomonas kenyensis AiR-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6065

Type strain:

Species: Halomonas kenyensis

Strain Designation: AiR-2

Culture col. no.: DSM 17331, VKM B-2354

Strain history: <- T. N. Zhilina, Winogradski Inst. Microbiol., RAS, Moscow; AiR-2 <- D. Yu. Sorokin

NCBI tax ID(s): 321266 (species)

SI-ID 402236

DSM 17331

Special Collections

DSMZ

Section

Halomonas kenyensis AiR-2 is a Gram-negative bacterium that was isolated from sediments from the five highly alkaline soda lakes of Kenya.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas kenyensis**
	Full Scientific Name (LPSN)	Halomonas kenyensis Boltyanskaya et al. 2008

Synonym

"Billgrantia kenyensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6899]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6899]

Culture medium growth

[Ref.: #6899]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6899]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6899]			growth	36 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6899]	Sample type/isolated from	sediments from the five highly alkaline soda lakes of Kenya
[Ref.: #6899]	Geographic location (country and/or sea, region)	Country of origin unknown, Africa
[Ref.: #6899]	Country	Africa
[Ref.: #6899]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6899]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6899]	Halomonas sp. AIR-2 16S ribosomal RNA gene, partial sequence	AY962237	1371	GenBank ENA	321266 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas kenyensis DSM 17331	GCA_013697085	contig	GenBank ENA	321266 tax ID	*
[Ref.: #66792]	Halomonas kenyensis strain DSM 17331	321266.3	wgs	PATRIC	321266 tax ID	*
[Ref.: #66792]	Halomonas kenyensis DSM 17331	GCA_022341445	contig	GenBank ENA	321266 tax ID	*

[Ref.: #6899]

GC-content

65.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas kenyensis strain DSM 17331 PATRIC: 321266.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas kenyensis strain DSM 17331 PATRIC: 321266.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.936	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.891	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.28	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.478	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.78	no

Availability in culture collections External links

[Ref.: #6899]

Culture collection no.

DSM 17331, VKM B-2354

[Ref.: #75552]

SI-ID 402236

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas saliphila sp. nov., a moderately halophilic bacterium isolated from a saline soil.	Gan L, Long X, Zhang H, Hou Y, Tian J, Zhang Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002644	2018	*
Phylogeny	Halomonas heilongjiangensis sp. nov., a novel moderately halophilic bacterium isolated from saline and alkaline soil.	Dou G, He W, Liu H, Ma Y	Antonie Van Leeuwenhoek	10.1007/s10482-015-0493-4	2015	*
Phylogeny	[Halomonas mongoliensis sp. nov. and Halomonas kenyensis sp. nov., new haloalkaliphilic denitrifiers capable of reducing N2O, isolated from soda lakes].	Boltianskaia IuV, Kevbrin VV, Lysenko AM, Kolganova TV, Turova TP, Osipov GA, Zhilina TN	Mikrobiologiia		2007	*

References

#6899

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17331

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402236.1 )

* These data were automatically processed and therefore are not curated

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Halomonas kenyensis strain DSM 17331

Halomonas kenyensis strain DSM 17331

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