Name: Halomonas sabkhae 5-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6064

Type strain:

Species: Halomonas sabkhae

Strain Designation: 5-3

Culture col. no.: DSM 19122, CECT 7246, LMG 24084

Strain history: <- M. Monteoliva-Sánchez, Depart. Microbiol., Facultad de Farmacia, Campus Univ. de Cartuja s/n, Spain; 5-3 <- K. Kharroub

NCBI tax ID(s): 626223 (species)

SI-ID 307584

LMG 24084, CECT 7246, DSM 19122

Section

Halomonas sabkhae 5-3 is a thermophilic, Gram-negative, rod-shaped bacterium that was isolated from brines of Ezzemoul sabkha.

Gram-negative
rod-shaped
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas sabkhae**
	Full Scientific Name (LPSN)	Halomonas sabkhae Kharroub et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32321]	Gram stain	negative

[Ref.: #32321]	Cell length	1.2 µm

[Ref.: #32321]	Cell width	0.7 µm

[Ref.: #32321]	Cell shape	rod-shaped

[Ref.: #32321]	Motility	no

[Ref.: #32321]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7921]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7921]

Culture medium growth

[Ref.: #7921]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7921]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7921]	growth	40 °C
[Ref.: #32321]	growth	30-50 °C
[Ref.: #32321]	optimum	38.5 °C

[Ref.: #7921]	Temperature range	thermophilic
[Ref.: #32321]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32321]			optimum	7.5
[Ref.: #32321]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32321]		NaCl		growth	05-25	%
[Ref.: #32321]		NaCl		optimum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32321]	fructose ChEBI	+	carbon source
[Ref.: #32321]	galactose ChEBI	+	carbon source
[Ref.: #32321]	glucose ChEBI	+	carbon source
[Ref.: #32321]	lactose ChEBI	+	carbon source
[Ref.: #32321]	maltose ChEBI	+	carbon source
[Ref.: #32321]	nitrate ChEBI	+	reduction
[Ref.: #32321]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32321]		catalase	+	1.11.1.6
[Ref.: #32321]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7921]	Sample type/isolated from	brines of Ezzemoul sabkha
[Ref.: #7921]	Country	Algeria
[Ref.: #7921]	Country ISO 3 Code	DZA
[Ref.: #7921]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7921]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7921]	Halomonas sabkhae strain 5-3 16S ribosomal RNA gene, complete sequence	EF442769	1540	ENA	626223 tax ID

[Ref.: #7921]	GC-content	57.0 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32321]	GC-content	57 mol%

Availability in culture collections External links

[Ref.: #7921]

Culture collection no.

DSM 19122, CECT 7246, LMG 24084

[Ref.: #75551]

SI-ID 307584

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas sabkhae sp. nov., a moderately halophilic bacterium isolated from an Algerian sabkha.	Kharroub K, Jimenez-Pranteda ML, Aguilera M, Boulahrouf A, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.65307-0	2008	*

References

#7921

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19122

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32321

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28557 (see below)

#75551

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307584.1 )

#28557

IJSEM 40 2008 ( DOI 10.1099/ijs.0.65307-0 , PubMed 18175679 )

* These data were automatically processed and therefore are not curated

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