Name: Halomonas meridiana 1874b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6022

Type strain:

Species: Halomonas meridiana

Strain Designation: 1874b, Slthf1

Culture col. no.: DSM 15724

Strain history: <- M. C. Marquez; 1874b <- J. Z. Kaye

NCBI tax ID(s): 29570 (species)

SI-ID 139421

CCM 7105, CECT 5813, ATCC BAA-801, DSM 15724

Other strains from Halomonas meridiana

H. meridiana DSM 5425, ACAM 246, ATCC 49692, ... (type strain)
H. meridiana B1, Eplume2, DSM 15721
H. meridiana CIP 108040
H. meridiana CIP 108043

Section

Halomonas meridiana 1874b is a mesophilic bacterium that was isolated from low tamperature hydrothermal fluid.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas meridiana**
	Full Scientific Name (LPSN)	Halomonas meridiana James et al. 1990

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6082]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6082]

Culture medium growth

[Ref.: #6082]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6082]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6082]			growth	28 °C

[Ref.: #6082]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6082]	Sample type/isolated from	low tamperature hydrothermal fluid
[Ref.: #6082]	Geographic location (country and/or sea, region)	17.5°S Southern East Pacific Rise, international waters
[Ref.: #6082]	Geographic location	-17.5000°/0.0000°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF212217 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	5177
Soil Samples	435
Animal Samples	4415
Plant Samples	138
Total Samples	10165

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6082]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6082]	Halomonas meridiana strain Slthf1 16S ribosomal RNA gene, complete sequence	AF212217	1404	ENA	29570 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas meridiana Slthf1	GCA_011398715	complete	GenBank	29570 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas meridiana Slthf1 NCBI: GCA_011398715.1
[Ref.: #69480]	motile	yes	91.4	no
[Ref.: #69480]	flagellated	yes	77.38	no
[Ref.: #69480]	gram-positive	no	98.821	no
[Ref.: #69480]	anaerobic	no	98.576	no
[Ref.: #69480]	aerobic	yes	90.637	no
[Ref.: #69480]	halophile	yes	93.793	no
[Ref.: #69480]	spore-forming	no	95.819	no
[Ref.: #69480]	glucose-util	yes	85.62	no
[Ref.: #69480]	thermophile	no	98.924	yes
[Ref.: #69480]	glucose-ferment	no	76.908	no

Availability in culture collections External links

[Ref.: #6082]

Culture collection no.

DSM 15724

[Ref.: #75508]

SI-ID 139421

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Halomonas meridiana Strain Slthf1, Isolated from a Deep-Sea Thermal Vent.	Takahashi Y, Takahashi H, Galipon J, Arakawa K	Microbiol Resour Announc	10.1128/MRA.00292-20	2020	*
Phylogeny	Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments.	Kaye JZ, Marquez MC, Ventosa A, Baross JA	Int J Syst Evol Microbiol	10.1099/ijs.0.02799-0	2004	*

References

#6082

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15724

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75508

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID139421.1 )

* These data were automatically processed and therefore are not curated

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Halomonas meridiana Slthf1

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