Halomonas subglaciescola DSM 4683 is a mesophilic, Gram-negative, motile prokaryote that was isolated from water, organic lake.
Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Oceanospirillales |
| Family Halomonadaceae |
| Genus Halomonas |
| Species Halomonas subglaciescola |
| Full scientific name Halomonas subglaciescola Franzmann et al. 1987 |
| Synonyms (1) |
| BacDive ID | Other strains from Halomonas subglaciescola (1) | Type strain |
|---|---|---|
| 6024 | H. subglaciescola DSM 4684, ACAM 21, ATCC 43669, UQM 2927 |
| @ref | Gram stain | Cell shape | Motility | Flagellum arrangement | |
|---|---|---|---|---|---|
| 123345 | negative | rod-shaped | peritrichous |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1679 | MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b) | Medium recipe at MediaDive | Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 60.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 1679 | HALOMONAS SUBGLACIESCOLA (ARTIFICAL ORGANIC LAKE MEDIUM) (DSMZ Medium 602) | Medium recipe at MediaDive | Name: HALOMONAS SUBGLACIESCOLA (DSMZ Medium 602) Composition: NaCl 80.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.594 g/l KCl 0.5 g/l Nitrilotriacetic acid 0.2 g/l KNO3 0.1 g/l (NH4)2SO4 0.1 g/l CaCl2 x 2 H2O 0.0667 g/l K2HPO4 0.05 g/l KH2PO4 0.05 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-05 g/l Thiamine-HCl x 2 H2O 1e-05 g/l Pyridoxine hydrochloride 1e-05 g/l Nicotinamide 5e-06 g/l Calcium pantothenate 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l Distilled water | ||
| 34490 | MEDIUM 109 - for Halomonas subglaciescola | Distilled water make up to (960.000 ml);Sodium chloride (100.000 g);Potassium chloride (5.000 g);Magnesium chloride hexahydrate (5.000 g);Magnesium sulphate heptahydrate (9.500 g);Agar (15.000 g);Yeast extract (1.000 g);Ammonium sulphate (0.100 g);Potassi | |||
| 123345 | CIP Medium 109 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 123345 | 16947 ChEBI | citrate | - | carbon source | |
| 123345 | 4853 ChEBI | esculin | - | hydrolysis | |
| 123345 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 123345 | 15792 ChEBI | malonate | - | assimilation | |
| 123345 | 17632 ChEBI | nitrate | - | builds gas from | |
| 123345 | 17632 ChEBI | nitrate | + | reduction | |
| 123345 | 17632 ChEBI | nitrate | - | respiration | |
| 123345 | 16301 ChEBI | nitrite | - | builds gas from | |
| 123345 | 16301 ChEBI | nitrite | - | reduction |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 123345 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 123345 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 123345 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123345 | caseinase | - | 3.4.21.50 | |
| 123345 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 123345 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 123345 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 123345 | gelatinase | - | ||
| 123345 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 123345 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 123345 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 123345 | ornithine decarboxylase | - | 4.1.1.17 | |
| 123345 | oxidase | + | ||
| 123345 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 123345 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123345 | tryptophan deaminase | - | ||
| 123345 | tween esterase | - | ||
| 123345 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | aspartate and asparagine metabolism | 100 | 9 of 9 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | glutamate and glutamine metabolism | 89.29 | 25 of 28 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | NAD metabolism | 83.33 | 15 of 18 | ||
| 66794 | vitamin B6 metabolism | 81.82 | 9 of 11 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | citric acid cycle | 78.57 | 11 of 14 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | purine metabolism | 72.34 | 68 of 94 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | arginine metabolism | 70.83 | 17 of 24 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | phenylalanine metabolism | 69.23 | 9 of 13 | ||
| 66794 | methionine metabolism | 69.23 | 18 of 26 | ||
| 66794 | alanine metabolism | 68.97 | 20 of 29 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | pyrimidine metabolism | 64.44 | 29 of 45 | ||
| 66794 | pentose phosphate pathway | 63.64 | 7 of 11 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | non-pathway related | 63.16 | 24 of 38 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | oxidative phosphorylation | 60.44 | 55 of 91 | ||
| 66794 | Entner Doudoroff pathway | 60 | 6 of 10 | ||
| 66794 | histidine metabolism | 58.62 | 17 of 29 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 58.33 | 7 of 12 | ||
| 66794 | isoprenoid biosynthesis | 57.69 | 15 of 26 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | glutathione metabolism | 57.14 | 8 of 14 | ||
| 66794 | lysine metabolism | 57.14 | 24 of 42 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | allantoin degradation | 55.56 | 5 of 9 | ||
| 66794 | d-mannose degradation | 55.56 | 5 of 9 | ||
| 66794 | tryptophan metabolism | 55.26 | 21 of 38 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | carnitine metabolism | 50 | 4 of 8 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | glycogen biosynthesis | 50 | 2 of 4 | ||
| 66794 | urea cycle | 46.15 | 6 of 13 | ||
| 66794 | reductive acetyl coenzyme A pathway | 42.86 | 3 of 7 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 41.18 | 7 of 17 | ||
| 66794 | glycogen metabolism | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | ||
| 66794 | 3-phenylpropionate degradation | 33.33 | 5 of 15 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | nitrate assimilation | 33.33 | 3 of 9 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | phenol degradation | 30 | 6 of 20 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | degradation of sugar acids | 28 | 7 of 25 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | vitamin E metabolism | 25 | 1 of 4 | ||
| 66794 | degradation of sugar alcohols | 25 | 4 of 16 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | degradation of pentoses | 25 | 7 of 28 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | androgen and estrogen metabolism | 25 | 4 of 16 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 | ||
| 66794 | arachidonic acid metabolism | 22.22 | 4 of 18 | ||
| 66794 | daunorubicin biosynthesis | 22.22 | 2 of 9 |
Global distribution of 16S sequence AJ306892 (>99% sequence identity) for Halomonas subglaciescola subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | IMG-taxon 2698536942 annotated assembly for Vreelandella subglaciescola ACAM 12 | chromosome | 29571 | 89.32 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Halomonas subglaciescola partial 16S rRNA gene, strain DSM 4683 | AJ306892 | 1531 | 29571 | ||
| 20218 | Halomonas subglaciescola (DSM 4683) 16S ribosomal RNA (16S rRNA) gene | M93358 | 1481 | 29571 | ||
| 20218 | Halomonas subglaciescola gene for 16S rRNA, partial sequence, strain: NBRC 14766 | AB680658 | 1463 | 29571 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 61.7 | thermal denaturation, midpoint method (Tm) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Validation List no. 216. Valid publication of new names and new combinations effectively published outside the IJSEM. | Oren A, Goker M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006229 | 2024 | ||
| Genetics | Complete genome sequencing and comparison of two nitrogen-metabolizing bacteria isolated from Antarctic deep-sea sediment. | Liu W, Cong B, Lin J, Zhao L, Liu S. | BMC Genomics | 10.1186/s12864-022-08942-6 | 2022 | |
| Pathogenicity | Determination of Plasmid pSN1216-29 Host Range and the Similarity in Oligonucleotide Composition Between Plasmid and Host Chromosomes. | Tokuda M, Suzuki H, Yanagiya K, Yuki M, Inoue K, Ohkuma M, Kimbara K, Shintani M. | Front Microbiol | 10.3389/fmicb.2020.01187 | 2020 | |
| Analysis of the association between microbiota and flavor formation during Zizhong Dongjian fermentation process. | Li Z, Wang M, Yang Z. | Food Sci Nutr | 10.1002/fsn3.4460 | 2024 | ||
| Physicochemical property, volatile flavor quality, and microbial community composition of Jinhua fatty ham and lean ham: A comparative study. | Zhang J, Zhao K, Li H, Li S, Xu W, Chen L, Xie J, Tang H. | Front Microbiol | 10.3389/fmicb.2023.1124770 | 2023 | ||
| Establishment of genetic tools for genomic DNA engineering of Halomonas sp. KM-1, a bacterium with potential for biochemical production. | Tsuji A, Takei Y, Azuma Y. | Microb Cell Fact | 10.1186/s12934-022-01797-2 | 2022 | ||
| Metabolism | Growth and physiological properties of wild type and mutants of Halomonas subglaciescola DH-1 in saline environment. | Ryu HJ, Jeong YJ, Park DH. | J Microbiol | 2004 | ||
| Ability of Moderately Halophilic Bacteria to Control Grey Mould Disease on Tomato Fruits | Sadfi-Z.ouaoui N, Essghaier B, Hajlaoui MR, Fardeau ML, Cayaol JL, Ollivier B, Boudabous A. | Journal of phytopathology. | 10.1111/j.1439-0434.2007.01329.x | 2008 | ||
| Genetics | A long-awaited taxogenomic investigation of the family Halomonadaceae. | de la Haba RR, Arahal DR, Sanchez-Porro C, Chuvochina M, Wittouck S, Hugenholtz P, Ventosa A. | Front Microbiol | 10.3389/fmicb.2023.1293707 | 2023 | |
| Construction of novel shuttle vectors for use between moderately halophilic bacteria and Escherichia coli. | Mellado E, Nieto JJ, Ventosa A. | Plasmid | 10.1006/plas.1995.0001 | 1995 | ||
| Hexavalent chromium reduction by chromate-resistant haloalkaliphilic Halomonas sp. M-Cr newly isolated from tannery effluent. | Mabrouk ME, Arayes MA, Sabry SA. | Biotechnol Biotechnol Equip | 10.1080/13102818.2014.937092 | 2014 | ||
| Development of a gene reporter system in moderately halophilic bacteria by employing the ice nucleation gene of Pseudomonas syringae. | Arvanitis N, Vargas C, Tegos G, Perysinakis A, Nieto JJ, Ventosa A, Drainas C. | Appl Environ Microbiol | 10.1128/aem.61.11.3821-3825.1995 | 1995 | ||
| Metabolism | Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea. | Williams TJ, Allen MA, DeMaere MZ, Kyrpides NC, Tringe SG, Woyke T, Cavicchioli R. | ISME J | 10.1038/ismej.2014.18 | 2014 | |
| Survey of metal tolerance in moderately halophilic eubacteria. | Nieto JJ, Fernandez-Castillo R, Marquez MC, Ventosa A, Quesada E, Ruiz-Berraquero F. | Appl Environ Microbiol | 10.1128/aem.55.9.2385-2390.1989 | 1989 | ||
| Metabolism | Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake. | Yau S, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Rich J, Gibson JA, Cavicchioli R. | ISME J | 10.1038/ismej.2013.69 | 2013 |
| #1679 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4683 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #34490 | ; Curators of the CIP; |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123345 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104042 |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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