Name: Bacillus badius 663
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 602

Type strain:

Species: Bacillus badius

Strain Designation: 663, Henry 110

Culture col. no.: DSM 23, ATCC 14574, CCM 2113, NCIB 9364, NCTC 10333, CCUG 7412, CIP 58.52, IAM 11059, NRS 663, JCM 12228, BCRC 11699, CECT 17, HAMBI 1885, IFO 15713, KCTC 3739, LMG 7122, MTCC 1458, NBIMCC 2210, NBRC 15713, NCFB 1760, NCIMB 9364, NRRL NRS-663, VKM B-496

Strain history: NRRL NRS-663 <-- N. R. Smith NRS-663 <-- B. S. Henry 110 <-- M. Batchelor.

NCBI tax ID(s): 1348627 (strain), 1455 (species)

Other strains from Bacillus badius

B. badius DSM 5610, NRS 1407
B. badius KO_52, DSM 30822
B. badius CIP 102395
B. badius CIP 58.53
B. badius CCUG 29463, NRRL NRS-1671

Section

Bacillus badius 663 is an aerobe, mesophilic bacterium of the family Bacillaceae.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus badius**
	Full Scientific Name (PNU)	Bacillus badius Batchelor 1919 (Approved Lists 1980)

	Synonym	"Pseudobacillus* badius"*
	Synonym	Bacillus encimensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %97.284

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41065]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41065]

Culture medium growth

[Ref.: #41065]

Culture medium composition

expand / minimize

[Ref.: #2024]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2024]

Culture medium growth

[Ref.: #2024]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2024]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2024]	growth	30 °C
[Ref.: #41065]	growth	30 °C
[Ref.: #44982]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2024]	Temperature range	mesophilic
[Ref.: #41065]	Temperature range	mesophilic
[Ref.: #44982]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44982]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence X77790 (>99% sequence identity) for Bacillus badius subclade from Microbeatlas

Aquatic Samples	379
Soil Samples	680
Animal Samples	1037
Plant Samples	121
Total Samples	2217

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2024]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus badius clone BBAD-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478074	439	ENA	1455 tax ID	*
[Ref.: #20218]	Bacillus badius strain ATCC14574 DNA for 16S ribosomal RNA, partial sequence	D78310	1435	ENA	1455 tax ID	*
[Ref.: #20218]	B.badius (ATCC 14574) 16S rRNA gene	X77790	1442	ENA	1455 tax ID	*
[Ref.: #20218]	Bacillus badius gene for 16S rRNA, partial sequence	AB006921	279	ENA	1455 tax ID	*
[Ref.: #20218]	Bacillus badius gene for 16S rRNA, partial sequence	AB271748	1481	ENA	1455 tax ID	*
[Ref.: #20218]	B.badius 16S ribosomal RNA	X60610	1433	ENA	1455 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacillus badius NBRC 15713 NBRC 15713	GCA_001591605	contig	GenBank	1348627 tax ID
[Ref.: #67770]	Bacillus badius MTCC 1458	GCA_000829535	contig	GenBank	1455 tax ID
[Ref.: #66792]	Bacillus badius MTCC 1458	1455.5	wgs	PATRIC	1455 tax ID	*
[Ref.: #66792]	Bacillus badius NBRC 15713	1348627.3	wgs	PATRIC	1348627 tax ID	*
[Ref.: #66792]	Bacillus badius MTCC 1458	2636415587	draft	JGI IMG/M	1455 tax ID	*
[Ref.: #66792]	Bacillus badius NBRC 15713	2731957658	draft	JGI IMG/M	1348627 tax ID	*

[Ref.: #2024]	GC-content	43.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2024]	GC-content	43.5 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus badius NBRC 15713 PATRIC: 1348627.3
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	yes	100	yes
[Ref.: #69480]	thermophile	no	99.475	no
[Ref.: #69480]	anaerobic	no	98.949	yes
[Ref.: #69480]	motile	yes	97.284	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus badius NBRC 15713 PATRIC: 1348627.3
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #2024]

Culture collection no.

DSM 23, ATCC 14574, CCM 2113, NCIB 9364, NCTC 10333, CCUG 7412, CIP 58.52, IAM 11059, NRS 663, JCM 12228, BCRC 11699, CECT 17, HAMBI 1885, IFO 15713, KCTC 3739, LMG 7122, MTCC 1458, NBIMCC 2210, NBRC 15713, NCFB 1760, NCIMB 9364, NRRL NRS-663, VKM B-496

[Ref.: #20218]

Associated Passport(s) in StrainInfo

4466, 4460, 4462, 4471, 4472

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov.	Verma A, Pal Y, Ojha AK, Kumari M, Khatri I, Rameshkumar N, Schumann P, Dastager SG, Mayilraj S, Subramanian S, Krishnamurthi S	Syst Appl Microbiol	10.1016/j.syapm.2019.03.003	2019	*
Phylogeny	Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius.	Verma A, Pal Y, Khatri I, Ojha AK, Gruber-Vodicka H, Schumann P, Dastager S, Subramanian S, Mayilraj S, Krishnamurthi S	Syst Appl Microbiol	10.1016/j.syapm.2017.07.010	2017	*
Phylogeny	Bacillus wudalianchiensis sp. nov., isolated from grass soils of the Wudalianchi scenic area.	Liu B, Liu GH, Sengonca C, Schumann P, Wang JP, Zhu YJ, Zhang HF	Int J Syst Evol Microbiol	10.1099/ijsem.0.002042	2017	*
Phylogeny	Bacillus thermotolerans sp. nov., a thermophilic bacterium capable of reducing humus.	Yang G, Zhou X, Zhou S, Yang D, Wang Y, Wang D	Int J Syst Evol Microbiol	10.1099/ijs.0.048942-0	2013	*
Phylogeny	Domibacillus robiginosus gen. nov., sp. nov., isolated from a pharmaceutical clean room.	Seiler H, Wenning M, Scherer S	Int J Syst Evol Microbiol	10.1099/ijs.0.044396-0	2012	*
Phylogeny	Bacillus acidiproducens sp. nov., vineyard soil isolates that produce lactic acid.	Jung MY, Kim JS, Chang YH	Int J Syst Evol Microbiol	10.1099/ijs.0.003913-0	2009	*
Enzymology	Nucleotide sequencing of phenylalanine dehydrogenase gene from Bacillus badius IAM 11059.	Yamada A, Dairi T, Ohno Y, Huang XL, Asano Y	Biosci Biotechnol Biochem	10.1271/bbb.59.1994	1995	*
Enzymology	Phenylalanine dehydrogenase of Bacillus badius. Purification, characterization and gene cloning.	Asano Y, Nakazawa A, Endo K, Hibino Y, Ohmori M, Numao N, Kondo K	Eur J Biochem	10.1111/j.1432-1033.1987.tb13399.x	1987	*
Phylogeny	[Description of the type strain of Bacillus badius].	Pichinoty F	Ann Microbiol (Paris)		1984	*

References

#2024

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41065 ; Curators of the CIP;
#44982 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7412

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Bacillus badius NBRC 15713

Bacillus badius NBRC 15713

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