Strain identifier
BacDive ID: 602
Type strain:
Species: Bacillus badius
Strain Designation: 663, Henry 110, 110, NRS-663
Strain history: CIP <- 1958, R.E. Gordon, New Jersey Agri. Stat., New Brunswick, USA <- N.R. Smith: strain NRS-663 <- B.S. Henry: strain 110 <- 1919, M. Batchelor
NCBI tax ID(s): 1348627 (strain), 1455 (species)
General
@ref: 2024
BacDive-ID: 602
DSM-Number: 23
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile
description: Bacillus badius 663 is an aerobe, spore-forming, mesophilic bacterium that was isolated from Human, Intestinal tract of a child, Bacteriological Laboratory and the Harriet Lane Home, Johns Hopkins University.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1455 | species |
1348627 | strain |
strain history
@ref | history |
---|---|
2024 | <- ATCC <- R.E. Gordon <- N.R. Smith, 663 <- B.S. Henry, 110 <- M. Batchelor |
67770 | NRRL NRS-663 <-- N. R. Smith NRS-663 <-- B. S. Henry 110 <-- M. Batchelor. |
116701 | CIP <- 1958, R.E. Gordon, New Jersey Agri. Stat., New Brunswick, USA <- N.R. Smith: strain NRS-663 <- B.S. Henry: strain 110 <- 1919, M. Batchelor |
doi: 10.13145/bacdive602.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus badius
- full scientific name: Bacillus badius Batchelor 1919 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pseudobacillus badius 20215 Bacillus encimensis
@ref: 2024
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus badius
full scientific name: Bacillus badius Batchelor 1919
strain designation: 663, Henry 110, 110, NRS-663
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 97.284 | ||
69480 | 100 | positive | ||
116701 | yes | positive | rod-shaped |
colony morphology
- @ref: 116701
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41065 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
2024 | NUTRIENT AGAR (DSMZ Medium 1) | yes | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/1 |
116701 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
116701 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2024 | positive | growth | 30 | mesophilic |
41065 | positive | growth | 30 | mesophilic |
44982 | positive | growth | 30-37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
116701 | positive | growth | 22-45 | |
116701 | no | growth | 10 | psychrophilic |
116701 | no | growth | 55 | thermophilic |
culture pH
- @ref: 116701
- ability: positive
- type: growth
- pH: 6
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44982 | aerobe |
116701 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
116701 | yes |
halophily
- @ref: 116701
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
116701 | citrate | - | carbon source | 16947 |
116701 | esculin | - | hydrolysis | 4853 |
116701 | hippurate | - | hydrolysis | 606565 |
116701 | nitrate | - | reduction | 17632 |
116701 | nitrite | - | reduction | 16301 |
116701 | nitrate | - | respiration | 17632 |
metabolite production
- @ref: 116701
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
116701 | 15688 | acetoin | - | |
116701 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
116701 | oxidase | - | |
116701 | beta-galactosidase | - | 3.2.1.23 |
116701 | alcohol dehydrogenase | - | 1.1.1.1 |
116701 | gelatinase | +/- | |
116701 | amylase | - | |
116701 | DNase | - | |
116701 | caseinase | + | 3.4.21.50 |
116701 | catalase | + | 1.11.1.6 |
116701 | tween esterase | - | |
116701 | gamma-glutamyltransferase | - | 2.3.2.2 |
116701 | lecithinase | - | |
116701 | lipase | - | |
116701 | lysine decarboxylase | - | 4.1.1.18 |
116701 | ornithine decarboxylase | - | 4.1.1.17 |
116701 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116701 | - | - | + | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116701 | +/- | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116701 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | + | - | + | - | - | - | + | + | + | - | + | - | - | - | - | - | - | + | + | + | + | + | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 116701
- sample type: Human, Intestinal tract of a child, Bacteriological Laboratory and the Harriet Lane Home, Johns Hopkins University
- geographic location: Baltimore, Maryland
- country: United States of America
- origin.country: USA
- continent: North America
taxonmaps
- @ref: 69479
- File name: preview.99_4961.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1133;97_1329;98_3709;99_4961&stattab=map
- Last taxonomy: Bacillus badius subclade
- 16S sequence: X77790
- Sequence Identity:
- Total samples: 2217
- soil counts: 680
- aquatic counts: 379
- animal counts: 1037
- plant counts: 121
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2024 | 1 | Risk group (German classification) |
116701 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bacillus badius clone BBAD-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF478074 | 439 | ena | 1455 |
20218 | Bacillus badius strain ATCC14574 DNA for 16S ribosomal RNA, partial sequence | D78310 | 1435 | ena | 1455 |
20218 | B.badius (ATCC 14574) 16S rRNA gene | X77790 | 1442 | ena | 1455 |
20218 | Bacillus badius gene for 16S rRNA, partial sequence | AB006921 | 279 | ena | 1455 |
20218 | Bacillus badius gene for 16S rRNA, partial sequence | AB271748 | 1481 | ena | 1455 |
20218 | B.badius 16S ribosomal RNA | X60610 | 1433 | ena | 1455 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bacillus badius MTCC 1458 | 1455.5 | wgs | patric | 1455 |
66792 | Bacillus badius NBRC 15713 | 1348627.3 | wgs | patric | 1348627 |
66792 | Bacillus badius MTCC 1458 | 2636415587 | draft | img | 1455 |
66792 | Bacillus badius NBRC 15713 | 2731957658 | draft | img | 1348627 |
67770 | Bacillus badius NBRC 15713 | GCA_001591605 | contig | ncbi | 1348627 |
67770 | Bacillus badius MTCC 1458 | GCA_000829535 | contig | ncbi | 1455 |
GC content
@ref | GC-content | method |
---|---|---|
2024 | 43.8 | thermal denaturation, midpoint method (Tm) |
2024 | 43.5 | Buoyant density centrifugation (BD) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 89.491 | no |
gram-positive | yes | 89.976 | no |
anaerobic | no | 96.873 | yes |
halophile | no | 89.488 | no |
spore-forming | yes | 96.038 | no |
thermophile | no | 99.302 | yes |
glucose-util | yes | 76.182 | no |
aerobic | yes | 88.979 | yes |
flagellated | yes | 77.088 | no |
glucose-ferment | no | 94.441 | no |
External links
@ref: 2024
culture collection no.: DSM 23, ATCC 14574, CCM 2113, NCIB 9364, NCTC 10333, CCUG 7412, CIP 58.52, IAM 11059, NRS 663, JCM 12228, BCRC 11699, CECT 17, HAMBI 1885, IFO 15713, KCTC 3739, LMG 7122, MTCC 1458, NBIMCC 2210, NBRC 15713, NCFB 1760, NCIMB 9364, NRRL NRS-663, VKM B-496, NCDO 1760
straininfo link
- @ref: 70279
- straininfo: 36979
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 3311741 | Phenylalanine dehydrogenase of Bacillus badius. Purification, characterization and gene cloning. | Asano Y, Nakazawa A, Endo K, Hibino Y, Ohmori M, Numao N, Kondo K | Eur J Biochem | 10.1111/j.1432-1033.1987.tb13399.x | 1987 | Amino Acid Oxidoreductases/genetics/*isolation & purification, Amino Acids/isolation & purification, Bacillus/*enzymology/genetics, Biological Evolution, Chromosomes, Bacterial, *Cloning, Molecular, DNA, Bacterial/genetics/isolation & purification, Electrophoresis, Polyacrylamide Gel, Escherichia coli/enzymology/genetics, *Genetic Vectors, Isoelectric Point, Plasmids, Substrate Specificity | Phylogeny |
Phylogeny | 6508070 | [Description of the type strain of Bacillus badius]. | Pichinoty F | Ann Microbiol (Paris) | 1984 | Bacillus/classification/growth & development/*physiology | ||
Enzymology | 8535000 | Nucleotide sequencing of phenylalanine dehydrogenase gene from Bacillus badius IAM 11059. | Yamada A, Dairi T, Ohno Y, Huang XL, Asano Y | Biosci Biotechnol Biochem | 10.1271/bbb.59.1994 | 1995 | Amino Acid Oxidoreductases/*genetics, Amino Acid Sequence, Bacillus/*enzymology/genetics, Base Sequence, DNA, Bacterial, Genes, Bacterial, Molecular Sequence Data, Open Reading Frames, Sequence Homology, Amino Acid | Genetics |
Phylogeny | 19605722 | Bacillus acidiproducens sp. nov., vineyard soil isolates that produce lactic acid. | Jung MY, Kim JS, Chang YH | Int J Syst Evol Microbiol | 10.1099/ijs.0.003913-0 | 2009 | Aerobiosis, Anaerobiosis, Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Flagella/physiology, Galactose/analysis, Glucose/analysis, Korea, Lactic Acid/*metabolism, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology | Metabolism |
Phylogeny | 23064349 | Domibacillus robiginosus gen. nov., sp. nov., isolated from a pharmaceutical clean room. | Seiler H, Wenning M, Scherer S | Int J Syst Evol Microbiol | 10.1099/ijs.0.044396-0 | 2012 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Environment, Controlled, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 23625259 | Bacillus thermotolerans sp. nov., a thermophilic bacterium capable of reducing humus. | Yang G, Zhou X, Zhou S, Yang D, Wang Y, Wang D | Int J Syst Evol Microbiol | 10.1099/ijs.0.048942-0 | 2013 | Anthraquinones/metabolism, Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Fumarates/metabolism, Genes, Bacterial, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology, Vitamin K 2/analogs & derivatives | Metabolism |
Phylogeny | 28820124 | Bacillus wudalianchiensis sp. nov., isolated from grass soils of the Wudalianchi scenic area. | Liu B, Liu GH, Sengonca C, Schumann P, Wang JP, Zhu YJ, Zhang HF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002042 | 2017 | Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Grassland, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives | Transcriptome |
Phylogeny | 28947104 | Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius. | Verma A, Pal Y, Khatri I, Ojha AK, Gruber-Vodicka H, Schumann P, Dastager S, Subramanian S, Mayilraj S, Krishnamurthi S | Syst Appl Microbiol | 10.1016/j.syapm.2017.07.010 | 2017 | Bacillus/*classification/*genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | |
Phylogeny | 30982666 | Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov. | Verma A, Pal Y, Ojha AK, Kumari M, Khatri I, Rameshkumar N, Schumann P, Dastager SG, Mayilraj S, Subramanian S, Krishnamurthi S | Syst Appl Microbiol | 10.1016/j.syapm.2019.03.003 | 2019 | Bacillaceae/chemistry/*classification/genetics, DNA, Bacterial/genetics, Fatty Acids/analysis, Genome, Bacterial/genetics, Lipids/analysis, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2024 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41065 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/9712 | ||||
44982 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 7412) | https://www.ccug.se/strain?id=7412 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
70279 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36979.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116701 | Curators of the CIP | Collection of Institut Pasteur (CIP 58.52) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2058.52 |