Name: Bacillus badius DSM 5610
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 603

Type strain:

Species: Bacillus badius

Culture col. no.: DSM 5610, NRS 1407

Strain history: <- NRRL; NRS 1407 <- M.D. Appleman, Univ. of Southern California, 1951

NCBI tax ID(s): 1455 (species)

SI-ID 7072

LMG 12332, NRRL NRS-1407, DSM 5610

Special Collections

DSMZ

Other strains from Bacillus badius

Section

Bacillus badius DSM 5610 is a spore-forming bacterium of the family Bacillaceae.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus badius**
	Full Scientific Name (LPSN)	Bacillus badius Batchelor 1919 (Approved Lists 1980)

	Synonym	"Pseudobacillus* badius"*
	Synonym	Bacillus encimensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2257]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2257]

Culture medium growth

[Ref.: #2257]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2257]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2257]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.321
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2257]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Bacillus badius partial 16S rRNA gene, strain DSM 5610	LT549009	1544	GenBank ENA	1455 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus badius DSM 5610	GCA_001632185	contig	GenBank ENA	1455 tax ID	*
[Ref.: #66792]	Bacillus badius strain DSM 5610	1455.7	wgs	PATRIC	1455 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus badius strain DSM 5610 PATRIC: 1455.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus badius strain DSM 5610 PATRIC: 1455.7
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	76.411	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.218	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.321	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.808	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.686	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.398	no

Availability in culture collections External links

[Ref.: #2257]

Culture collection no.

DSM 5610, NRS 1407

[Ref.: #70280]

SI-ID 7072

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic insights into the phylogeny of Bacillus badius and proposal for its reclassification to the genus Pseudobacillus as Pseudobacillus badius comb. nov. and reclassification of Bacillus wudalianchiensis Liu et al., 2017 as Pseudobacillus wudalianchiensis comb. nov.	Verma A, Pal Y, Ojha AK, Kumari M, Khatri I, Rameshkumar N, Schumann P, Dastager SG, Mayilraj S, Subramanian S, Krishnamurthi S	Syst Appl Microbiol	10.1016/j.syapm.2019.03.003	2019	*

References

#2257

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5610

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70280

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7072.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Bacillus badius strain DSM 5610

Bacillus badius strain DSM 5610

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