Chromohalobacter nigrandesensis (DSM 14323, CECT 5315, 4N)

Name: Chromohalobacter nigrandesensis (DSM 14323, CECT 5315, 4N)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6001

Type strain

Strain Designation 4N, LTS-4N

Culture col. no. DSM 14323 CECT 5315 4N LTS-4N

NCBI tax ID(s) 119863

Special Collections DSMZ Literature strains

History <- CECT <- B. Prado and et al., Depart. Microbiol., Facultad de Farmacia, Campus Univ. de Cartuja s/n, Spain

Links

Chromohalobacter nigrandesensis 4N is an aerobe, Gram-negative, motile bacterium that was isolated from hypersaline Lake Tebenquiche.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 194234

CECT 5315,DSM 14323,CIP 109263

@ref 20215

Last LPSN update 2026-02-09 11:19:06

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Chromohalobacter

Species Chromohalobacter nigrandesensis

Full scientific name Chromohalobacter nigrandesensis Prado et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31659	negative	2.3-4.2 µm	0.35-0.5 µm	rod-shaped
125438	negative				98.5
125439	negative				99.4
125439					90.1

Pigmentation

31659

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5308	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 40.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5308	positive	growth	30
31659	positive	growth	15-40
31659	positive	optimum	32

Culture pH

@ref	Ability	Type	PH	PH range
31659	positive	optimum	7
31659	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

31659

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
31659
125439		99.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31659	NaCl	positive	growth	0.5-25 %
31659	NaCl	positive	optimum	7.5 %

Observation

31659

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31659	30089 ChEBI	acetate	+	carbon source
31659	22599 ChEBI	arabinose	+	carbon source
31659	28757 ChEBI	fructose	+	carbon source
31659	28260 ChEBI	galactose	+	carbon source
31659	24265 ChEBI	gluconate	+	carbon source
31659	17234 ChEBI	glucose	+	carbon source
31659	17754 ChEBI	glycerol	+	carbon source
31659	24996 ChEBI	lactate	+	carbon source
31659	25115 ChEBI	malate	+	carbon source
31659	17306 ChEBI	maltose	+	carbon source
31659	29864 ChEBI	mannitol	+	carbon source
31659	37684 ChEBI	mannose	+	carbon source
31659	15361 ChEBI	pyruvate	+	carbon source
31659	30031 ChEBI	succinate	+	carbon source
31659	17992 ChEBI	sucrose	+	carbon source
31659	27082 ChEBI	trehalose	+	carbon source
31659	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31659	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
31659	catalase	+	1.11.1.6
31659	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5308	hypersaline Lake Tebenquiche	Atacama Saltern	Chile	CHL	Middle and South America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5308	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2306128v1 assembly for Chromohalobacter nigrandesensis DSM 14323	contig	GCA_023061285	119863.3	8046152325	119863	69.52

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5308	Chromohalobacter nigrandesensis partial 16S rRNA gene, type strain LTS-4NT	AJ277205	1505		119863
124043	Chromohalobacter nigrandesensis strain TMW 2.2376 16S ribosomal RNA gene, partial sequence.	OM585591	1540		119863

GC content

5308

GC-content (mol%)59.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chromohalobacter nigrandesensis DSM 14323
NCBI: GCA_023061285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	90.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	77.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chromohalobacter nigrandesensis DSM 14323
NCBI: GCA_023061285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	98.47	no
125438	aerobic	aerobicⓘ	yes	84.60	yes
125438	spore-forming	spore-formingⓘ	no	89.03	yes
125438	thermophilic	thermophileⓘ	no	96.98	yes
125438	flagellated	motile2+ⓘ	yes	81.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium isolated from a Japanese salty food.	Sanchez-Porro C, Tokunaga H, Tokunaga M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.65212-0	2007
Phylogeny	Chromohalobacter nigrandesensis sp. nov., a moderately halophilic, Gram-negative bacterium isolated from Lake Tebenquiche on the Atacama Saltern, Chile.	Prado B, Lizama C, Aguilera M, Ramos-Cormenzana A, Fuentes S, Campos V, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.63983-0	2006

References

#5308	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14323
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27940	IJSEM 647 2006 ( DOI 10.1099/ijs.0.63983-0 , PubMed 16514043 )
#31659	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27940
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chromohalobacter nigrandesensis (DSM 14323, CECT 5315, 4N)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023061285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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