Name: Chromohalobacter nigrandesensis 4N
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6001

Type strain:

Species: Chromohalobacter nigrandesensis

Strain Designation: 4N, LTS-4N

Culture col. no.: DSM 14323, CECT 5315

Strain history: <- CECT <- B. Prado and et al., Depart. Microbiol., Facultad de Farmacia, Campus Univ. de Cartuja s/n, Spain

NCBI tax ID(s): 119863 (species)

SI-ID 194234

CECT 5315, DSM 14323, CIP 109263

Section

Chromohalobacter nigrandesensis 4N is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hypersaline Lake Tebenquiche.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Chromohalobacter*
	Species	**Chromohalobacter nigrandesensis**
	Full Scientific Name (LPSN)	Chromohalobacter nigrandesensis Prado et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31659]	Gram stain	negative

[Ref.: #31659]	Cell length	2.3-4.2 µm

[Ref.: #31659]	Cell width	0.35-0.5 µm

[Ref.: #31659]	Cell shape	rod-shaped

[Ref.: #31659]	Motility	yes

[Ref.: #31659]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5308]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5308]

Culture medium growth

[Ref.: #5308]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5308]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5308]	growth	30 °C
[Ref.: #31659]	growth	15-40 °C
[Ref.: #31659]	optimum	32 °C

[Ref.: #5308]	Temperature range	mesophilic
[Ref.: #31659]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31659]			optimum	7
[Ref.: #31659]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31659]

Oxygen tolerance

aerobe

[Ref.: #31659]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31659]		NaCl		growth	0.5-25	%
[Ref.: #31659]		NaCl		optimum	7.5	%

[Ref.: #31659]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31659]	acetate ChEBI	+	carbon source
[Ref.: #31659]	arabinose ChEBI	+	carbon source
[Ref.: #31659]	fructose ChEBI	+	carbon source
[Ref.: #31659]	galactose ChEBI	+	carbon source
[Ref.: #31659]	gluconate ChEBI	+	carbon source
[Ref.: #31659]	glucose ChEBI	+	carbon source
[Ref.: #31659]	glycerol ChEBI	+	carbon source
[Ref.: #31659]	lactate ChEBI	+	carbon source
[Ref.: #31659]	malate ChEBI	+	carbon source
[Ref.: #31659]	maltose ChEBI	+	carbon source
[Ref.: #31659]	mannitol ChEBI	+	carbon source
[Ref.: #31659]	mannose ChEBI	+	carbon source
[Ref.: #31659]	pyruvate ChEBI	+	carbon source
[Ref.: #31659]	succinate ChEBI	+	carbon source
[Ref.: #31659]	sucrose ChEBI	+	carbon source
[Ref.: #31659]	trehalose ChEBI	+	carbon source
[Ref.: #31659]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31659]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31659]		catalase	+	1.11.1.6
[Ref.: #31659]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5308]	Sample type/isolated from	hypersaline Lake Tebenquiche
[Ref.: #5308]	Geographic location (country and/or sea, region)	Atacama Saltern
[Ref.: #5308]	Country	Chile
[Ref.: #5308]	Country ISO 3 Code	CHL
[Ref.: #5308]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5308]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5308]	Chromohalobacter nigrandesensis partial 16S rRNA gene, type strain LTS-4NT	AJ277205	1505	ENA	119863 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chromohalobacter nigrandesensis DSM 14323	GCA_023061285	contig	GenBank	119863 tax ID	*

[Ref.: #5308]

GC-content

59.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chromohalobacter nigrandesensis DSM 14323 NCBI: GCA_023061285.1
[Ref.: #69480]	flagellated	yes	56.194	no
[Ref.: #69480]	gram-positive	no	98.488	no
[Ref.: #69480]	anaerobic	no	99.008	yes
[Ref.: #69480]	aerobic	yes	93.155	yes
[Ref.: #69480]	halophile	yes	95.864	yes
[Ref.: #69480]	spore-forming	no	96.109	yes
[Ref.: #69480]	motile	yes	93.42	yes
[Ref.: #69480]	glucose-ferment	no	51.301	no
[Ref.: #69480]	thermophile	no	99.228	yes
[Ref.: #69480]	glucose-util	yes	93.202	no

Availability in culture collections External links

[Ref.: #5308]

Culture collection no.

DSM 14323, CECT 5315

[Ref.: #75490]

SI-ID 194234

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium isolated from a Japanese salty food.	Sanchez-Porro C, Tokunaga H, Tokunaga M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.65212-0	2007	*
Phylogeny	Chromohalobacter nigrandesensis sp. nov., a moderately halophilic, Gram-negative bacterium isolated from Lake Tebenquiche on the Atacama Saltern, Chile.	Prado B, Lizama C, Aguilera M, Ramos-Cormenzana A, Fuentes S, Campos V, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.63983-0	2006	*

References

#5308

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14323

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31659

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27940 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75490

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID194234.1 )

#27940

IJSEM 647 2006 ( DOI 10.1099/ijs.0.63983-0 , PubMed 16514043 )

* These data were automatically processed and therefore are not curated

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Chromohalobacter nigrandesensis DSM 14323

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