Name: Halonatronum saccharophilum Z-7986
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5986

Type strain:

Species: Halonatronum saccharophilum

Strain Designation: Z-7986

Culture col. no.: DSM 13868, UNIQUEM 211

Strain history: <- T. N. Zhilina; Z-7986

NCBI tax ID(s): 926692 (strain), 150060 (species)

SI-ID 100677

DSM 13868

Section

Halonatronum saccharophilum Z-7986 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from coastal lagoon mud.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Halanaerobiales*
	Family	*Halobacteroidaceae*
	Genus	*Halonatronum*
	Species	**Halonatronum saccharophilum**
	Full Scientific Name (LPSN)	Halonatronum saccharophilum Zhilina et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.878

[Ref.: #69480]	Motility	yes Confidence in %92.723

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5181]

Culture medium

HALONATRONUM SACCHAROPHILUM MEDIUM (DSMZ Medium 932)

[Ref.: #5181]

Culture medium growth

[Ref.: #5181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5181]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5181]			growth	40 °C

[Ref.: #5181]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %96.505

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5181]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %96.933

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5181]	Sample type/isolated from	coastal lagoon mud
[Ref.: #5181]	Geographic location (country and/or sea, region)	Lake Magadi
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5181]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5181]	Halonatronum saccharophilum 16S ribosomal RNA gene, partial sequence	AY014858	1414	ENA	150060 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halonatronum saccharophilum DSM 13868	GCA_000517025	scaffold	GenBank	926692 tax ID	*
[Ref.: #66792]	Halonatronum saccharophilum DSM 13868	926692.3	wgs	PATRIC	926692 tax ID	*
[Ref.: #66792]	Halonatronum saccharophilum Z-7986, DSM 13868	2509887032	draft	JGI IMG/M	926692 tax ID	*

[Ref.: #5181]

GC-content

34.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halonatronum saccharophilum DSM 13868 DSM 13868 NCBI: GCA_000517025.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halonatronum saccharophilum DSM 13868 DSM 13868 NCBI: GCA_000517025.1
[Ref.: #69480]	motile	yes	83.901	no
[Ref.: #69480]	flagellated	no	56.061	no
[Ref.: #69480]	gram-positive	no	88.382	no
[Ref.: #69480]	anaerobic	yes	97.979	yes
[Ref.: #69480]	halophile	yes	50.596	no
[Ref.: #69480]	spore-forming	no	51.811	no
[Ref.: #69480]	glucose-util	yes	81.746	no
[Ref.: #69480]	aerobic	no	97.543	no
[Ref.: #69480]	thermophile	no	76.683	yes
[Ref.: #69480]	glucose-ferment	no	52.068	no

Availability in culture collections External links

[Ref.: #5181]

Culture collection no.

DSM 13868, UNIQUEM 211

[Ref.: #75475]

SI-ID 100677

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Halonatronum saccharophilum gen. nov. sp. nov--a new haloalkalophilic bacteria from the order Haloanaerobiales from Lake Magadi].	Zhilina TN, Garnova ES, Turova TP, Kostrikina NA, Zavarzin GA	Mikrobiologiia		2001	*

References

#5181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13868

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75475

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100677.1 )

* These data were automatically processed and therefore are not curated

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Halonatronum saccharophilum DSM 13868 DSM 13868

Halonatronum saccharophilum DSM 13868 DSM 13868

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