Halorubrum lipolyticum 9-3 | Type strain | DSM 21995, CGMCC 1.5332, JCM 13559

Strain identifier

BacDive ID: 5951

Type strain:

Species: Halorubrum lipolyticum

Strain Designation: 9-3

Culture col. no.: DSM 21995, CGMCC 1.5332, JCM 13559

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Halorubrum lipolyticum 9-3 is an aerobe, mesophilic, gram-negative archaeon that was isolated from sediments of Aibi salt lake.

gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	10-09-2020 (DD-MM-YYYY)
	Domain	Archaea
	Phylum	Euryarchaeota
	Class	Halobacteria
	Order	Haloferacales
	Family	Halorubraceae
	Genus	Halorubrum
	Species	Halorubrum lipolyticum
	Full Scientific Name (PNU)	Halorubrum lipolyticum Cui et al. 2006

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #31797]	Gram stain	negative
[Ref.: #31797]	Cell length	1.8-5.5 µm
[Ref.: #31797]	Cell width	0.9-1.2 µm
[Ref.: #31797]	Cell shape	rod-shaped
[Ref.: #31797]	Motility	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31797]	catalase	+	1.11.1.6
[Ref.: #31797]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31797]	gelatinase	+

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31797]		NaCl		growth	9.86-27.84	%
[Ref.: #31797]		NaCl		optimum	15	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31797]	fructose ChEBI	+	carbon source
[Ref.: #31797]	galactose ChEBI	+	carbon source
[Ref.: #31797]	glucose ChEBI	+	carbon source
[Ref.: #31797]	maltose ChEBI	+	carbon source
[Ref.: #31797]	mannose ChEBI	+	carbon source
[Ref.: #31797]	nitrate ChEBI	+	reduction
[Ref.: #31797]	sucrose ChEBI	+	carbon source

[Ref.: #31797]

Observation

aggregates in chains

[Ref.: #31797]

Oxygen tolerance

aerobe

[Ref.: #31797]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #16088]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372), 37°C

[Ref.: #16088]

Culture medium growth

[Ref.: #16088]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #16088]	growth	37 ̊C
[Ref.: #31797]	growth	25-58 ̊C
[Ref.: #31797]	optimum	45-48 ̊C

[Ref.: #16088]	Temperature range	mesophilic
[Ref.: #31797]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31797]			optimum	7.5
[Ref.: #31797]			growth	07-09

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #16088]

Sample type/isolated from

sediments of Aibi salt lake

[Ref.: #16088]

Geographic location (country and/or sea, region)

Xin-Jiang

[Ref.: #16088]

Country

China

[Ref.: #16088]

Country ISO 3 Code

CHN

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Continent

Asia

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #16088]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #16088]	GC-content	65.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31797]	GC-content	65.9 mol%

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Halorubrum lipolyticum gene for RNA polymerase subunit B', complete cds, strain: JCM 13559	AB477182 ENA		1830	368624 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Halorubrum lipolyticum gene for 16S ribosomal RNA, partial sequence, strain: JCM 13559	AB477978 ENA	16S	1430	368624 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Halorubrum lipolyticum gene for 16S rRNA, complete sequence, strain: JCM 13559	AB663415 ENA	16S	1470	368624 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Halorubrum lipolyticum strain CGMCC 1.5332 DNA gyrase subunit B (gyrB) gene, partial cds	EU675317 ENA		1224	368624 tax ID	*
[Ref.: #16088]	16S rRNA gene, Marker Gene (GenBank Direct submission)	Halorubrum lipolyticum strain 9-3 16S ribosomal RNA gene, partial sequence	DQ355814 ENA	16S	1470	368624 tax ID

Availability in culture collectionsStrain availability

[Ref.: #16088]

Culture collection no.

DSM 21995, CGMCC 1.5332, JCM 13559

[Ref.: #16088]

Strain history

<- JCM/RIKEN <- S. Liu, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; strain 9-3

[Ref.: #20218]

Associated Passport(s) in StrainInfo

689864, 689865

References

#16088

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21995

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31797

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 ) - originally annotated from #28068 (see below)

#28068

IJSEM 1631 2006 ( DOI 10.1099/ijs.0.64305-0 )

* These References are textmined

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