Name: Halorubrum lipolyticum 9-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5951

Type strain:

Species: Halorubrum lipolyticum

Strain Designation: 9-3

Culture col. no.: DSM 21995, CGMCC 1.5332, JCM 13559, KCTC 4069

Strain history: S. Liu 9-3.

NCBI tax ID(s): 1227482 (strain), 368624 (species)

Section

Halorubrum lipolyticum 9-3 is an aerobe, mesophilic, Gram-negative archaeon that was isolated from sediments of Aibi salt lake.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	"Euryarchaeota"
	Class	Halobacteria
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum lipolyticum**
	Full Scientific Name (PNU)	Halorubrum lipolyticum Cui et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31797]	Gram stain	negative
[Ref.: #31797]	Cell length	1.8-5.5 µm
[Ref.: #31797]	Cell width	0.9-1.2 µm
[Ref.: #31797]	Cell shape	rod-shaped
[Ref.: #31797]	Motility	yes

[Ref.: #31797]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16088]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #16088]

Culture medium growth

[Ref.: #16088]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #16088]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16088]	growth	37 °C
[Ref.: #31797]	growth	25-58 °C
[Ref.: #31797]	optimum	45-48 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #16088]	Temperature range	mesophilic
[Ref.: #31797]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #31797]			optimum	7.5
[Ref.: #31797]			growth	07-09	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31797]

Oxygen tolerance

aerobe

[Ref.: #31797]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31797]		NaCl		growth	9.86-27.84	%
[Ref.: #31797]		NaCl		optimum	15	%

[Ref.: #31797]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31797]	fructose ChEBI	+	carbon source
[Ref.: #31797]	galactose ChEBI	+	carbon source
[Ref.: #31797]	glucose ChEBI	+	carbon source
[Ref.: #31797]	maltose ChEBI	+	carbon source
[Ref.: #31797]	mannose ChEBI	+	carbon source
[Ref.: #31797]	nitrate ChEBI	+	reduction
[Ref.: #31797]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31797]	catalase	+	1.11.1.6
[Ref.: #31797]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31797]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16088]	Sample type/isolated from	sediments of Aibi salt lake
[Ref.: #16088]	Geographic location (country and/or sea, region)	Xin-Jiang
[Ref.: #16088]	Country	China
[Ref.: #16088]	Country ISO 3 Code	CHN
[Ref.: #16088]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Aibi salt lake in Xin-Jiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB663415 (>99% sequence identity) for Halorubrum from Microbeatlas

Aquatic Samples	18
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	21

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16088]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halorubrum lipolyticum gene for 16S ribosomal RNA, partial sequence, strain: JCM 13559	AB477978	1430	ENA	368624 tax ID	*
[Ref.: #20218]	Halorubrum lipolyticum gene for 16S rRNA, complete sequence, strain: JCM 13559	AB663415	1470	ENA	368624 tax ID	*
[Ref.: #16088]	Halorubrum lipolyticum strain 9-3 16S ribosomal RNA gene, partial sequence	DQ355814	1470	ENA	368624 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halorubrum lipolyticum DSM 21995	2534682115	draft	JGI IMG/M	1227482 tax ID	*
[Ref.: #67770]	Halorubrum lipolyticum DSM 21995 DSM 21995	GCA_000337375	contig	GenBank	1227482 tax ID
[Ref.: #66792]	Citrobacter freundii 82	GCA_024638075	scaffold	PATRIC	546 tax ID	*

[Ref.: #16088]	GC-content	65.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31797]	GC-content	65.9 mol%

Availability in culture collections External links

[Ref.: #16088]

Culture collection no.

DSM 21995, CGMCC 1.5332, JCM 13559, KCTC 4069

[Ref.: #20218]

Associated Passport(s) in StrainInfo

689864, 689865

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum lipolyticum sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes in Xin-Jiang, China.	Cui HL, Tohty D, Zhou PJ, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64305-0	2006	*
Phylogeny	Halorubrum salinum sp. nov., isolated from a marine solar saltern.	Zhang WJ, Cui HL	Arch Microbiol	10.1007/s00203-014-0975-1	2014	*
Phylogeny	Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.	Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.000261	2015	*

References

#16088

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21995

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31797

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28068 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#28068

IJSEM 1631 2006 ( DOI 10.1099/ijs.0.64305-0 , PubMed 16825640 )

* These data were automatically processed and therefore are not curated

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