Name: Halorubrum aidingense 31-hong
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5952

Type strain:

Species: Halorubrum aidingense

Strain Designation: 31-hong

Culture col. no.: DSM 23496, CGMCC 1.2670, JCM 13560, KCTC 4073

Strain history: S. Liu 31-hong.

NCBI tax ID(s): 1230454 (strain), 368623 (species)

SI-ID 297205

CGMCC 1.2670, JCM 13560, DSM 23496

Special Collections

Section

Halorubrum aidingense 31-hong is an aerobe, Gram-negative, motile archaeon that was isolated from salt lake.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum aidingense**
	Full Scientific Name (LPSN)	Halorubrum aidingense Cui et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31797]	Gram stain	negative

[Ref.: #31797]	Cell length	3.6-6.4 µm

[Ref.: #31797]	Cell width	0.9-1 µm

[Ref.: #31797]	Cell shape	rod-shaped

[Ref.: #31797]	Motility	yes

[Ref.: #31797]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17239]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #17239]

Culture medium growth

[Ref.: #17239]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17239]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17239]	growth	37 °C
[Ref.: #31797]	growth	25-52 °C
[Ref.: #31797]	optimum	40-42 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31797]			optimum	7.5
[Ref.: #31797]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31797]

Oxygen tolerance

aerobe

[Ref.: #31797]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31797]		NaCl		growth	9.86-24.94	%
[Ref.: #31797]		NaCl		optimum	15.08	%

[Ref.: #31797]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31797]	fructose ChEBI	+	carbon source
[Ref.: #31797]	galactose ChEBI	+	carbon source
[Ref.: #31797]	glucose ChEBI	+	carbon source
[Ref.: #31797]	maltose ChEBI	+	carbon source
[Ref.: #31797]	mannitol ChEBI	+	carbon source
[Ref.: #31797]	mannose ChEBI	+	carbon source
[Ref.: #31797]	nitrate ChEBI	+	reduction
[Ref.: #31797]	sucrose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31797]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31797]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31797]		catalase	+	1.11.1.6
[Ref.: #31797]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17239]	Sample type/isolated from	salt lake
[Ref.: #17239]	Geographic location (country and/or sea, region)	Xin-Jiang, Aiding Lake
[Ref.: #17239]	Country	China
[Ref.: #17239]	Country ISO 3 Code	CHN
[Ref.: #17239]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Aiding salt lake in Xin-Jiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB663402 (>99% sequence identity) for Halorubrum aidingense from Microbeatlas

Aquatic Samples	12
Soil Samples
Animal Samples
Plant Samples
Total Samples	12

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17239]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17239]	Halorubrum aidingense strain 31-hong 16S ribosomal RNA gene, complete sequence	DQ355813	1470	GenBank ENA	1230454 tax ID
[Ref.: #20218]	Halorubrum aidingense gene for 16S ribosomal RNA, partial sequence, strain: JCM 13560	AB477976	1430	GenBank ENA	1230454 tax ID	*
[Ref.: #20218]	Halorubrum aidingense gene for 16S rRNA, complete sequence, strain: JCM 13560	AB663402	1470	GenBank ENA	1230454 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum aidingense JCM 13560	GCA_000336995	contig	GenBank ENA	1230454 tax ID
[Ref.: #66792]	Halorubrum aidingense JCM 13560	2554235475	draft	JGI IMG/M	1230454 tax ID	*
[Ref.: #66792]	Halorubrum aidingense JCM 13560	1230454.4	wgs	PATRIC	1230454 tax ID	*

[Ref.: #17239]	GC-content	64.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31797]	GC-content	64.2 mol%

Availability in culture collections External links

[Ref.: #17239]

Culture collection no.

DSM 23496, CGMCC 1.2670, JCM 13560, KCTC 4073

[Ref.: #75441]

SI-ID 297205

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum salsamenti sp. nov., a Novel Halophilic Archaeon Isolated from a Brine of Salt Mine.	Chen S, He J, Zhang J, Xu Y, Huang J, Ke LX	Curr Microbiol	10.1007/s00284-017-1325-8	2017	*
Phylogeny	Haloparvum sedimenti gen. nov., sp. nov., a member of the family Haloferacaceae.	Chen S, Liu HC, Zhou J, Xiang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001033	2016	*
Phylogeny	Halorubrum yunnanense sp. nov., isolated from a subterranean salt mine.	Chen S, Liu HC, Zhao D, Yang J, Zhou J, Xiang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.000605	2015	*
Phylogeny	Halorubrum kocurii sp. nov., an archaeon isolated from a saline lake.	Gutierrez MC, Castillo AM, Pagaling E, Heaphy S, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.65840-0	2008	*
Phylogeny	Halorubrum lipolyticum sp. nov. and Halorubrum aidingense sp. nov., isolated from two salt lakes in Xin-Jiang, China.	Cui HL, Tohty D, Zhou PJ, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64305-0	2006	*

References

#17239

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23496

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31797

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28068 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75441

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297205.1 )

#28068

IJSEM 1631 2006 ( DOI 10.1099/ijs.0.64305-0 , PubMed 16825640 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halorubrum aidingense in external resources:
SILVA
BRENDA
PANGAEA
GBIF