Natrinema versiforme (DSM 16034, ANMR 0149, AS 1.2365)

Name: Natrinema versiforme (DSM 16034, ANMR 0149, AS 1.2365)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5892

Type strain

Strain Designation XF10

Culture col. no. DSM 16034 ANMR 0149 AS 1.2365 JCM 10478 XF10 1 more

NCBI tax ID(s) 1227496 88724

Special Collections DSMZ JCM

Links

Natrinema versiforme XF10 is a mesophilic prokaryote that was isolated from Aibi salt lake.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100801

AS 1.2365,JCM 10478,DSM 16034,CGMCC 1.2365

@ref 20215

Last LPSN update 2025-12-16 09:48:10

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natrinema

Species Natrinema versiforme

Full scientific name Natrinema versiforme Xin et al. 2000

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.6

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6169	HALOBACTERIA MEDIUM (DSMZ Medium 372)		Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6169	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	93.4

Spore formation

@ref	Spore formation	Confidence
125439		92.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6169	Aibi salt lake	Xinjiang	China	CHN	Asia
67770	Aibi salt lake	Xinjiang	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB023426 (>99% sequence identity) for Natrinema versiforme from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6169	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM33719v1 assembly for Natrinema versiforme JCM 10478	contig	GCA_000337195	1227496.3	2554235502	1227496	59.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Natrinema versiforme gene for 16S rRNA, complete sequence, strain: JCM 10478	AB663465	1474		88724
6169	Natrinema versiforme gene for 16S ribosomal RNA, partial sequence	AB023426	1438		88724

GC content

@ref	GC-content (mol%)	Method
67770	64.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Natrinema versiforme JCM 10478
NCBI: GCA_000337195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.80	no
125439	motility	BacteriaNetⓘ	yes	59.80	no
125439	gram_stain	BacteriaNetⓘ	negative	93.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Extremophilic Natrinema versiforme Against Pseudomonas aeruginosa Quorum Sensing and Biofilm.	Basaran TI, Berber D, Gokalsin B, Tramice A, Tommonaro G, Abbamondi GR, Erginer Haskoylu M, Toksoy Oner E, Iodice C, Sesal NC.	Front Microbiol	10.3389/fmicb.2020.00079	2020
Pathogenicity	A type IV pili-mediated mutualism between two co-resident temperate archaeal viruses and their host.	Xiang J, Sonani RR, Wang Y, Chen Z, Xiong W, Chen J, Li S, An K, Wang Y, Liu Y, Kreutzberger MAB, Krupovic M, Egelman EH, Du S, Chen X.	Cell Rep	10.1016/j.celrep.2025.115873	2025
	Strategies of Environmental Adaptation in the Haloarchaeal Genera Haloarcula and Natrinema.	Strakova D, Sanchez-Porro C, de la Haba RR, Ventosa A.	Microorganisms	10.3390/microorganisms13040761	2025
Enzymology	A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2.	Wang J, Liu Y, Liu Y, Du K, Xu S, Wang Y, Krupovic M, Chen X.	Nucleic Acids Res	10.1093/nar/gky005	2018
	A virus-borne DNA damage signaling pathway controls the lysogeny-induction switch in a group of temperate pleolipoviruses.	Chen Z, Liu Y, Wang Y, Du X, Deng X, Xiang J, Wang Y, Wang J, Krupovic M, Du S, Chen X.	Nucleic Acids Res	10.1093/nar/gkad125	2023
	High quality draft genome sequence of an extremely halophilic archaeon Natrinema altunense strain AJ2^T.	Cheng H, Huo YY, Hu J, Xu XW, Wu M.	Stand Genomic Sci	10.1186/s40793-017-0237-3	2017
Metabolism	Dihydroxyacetone metabolism in Haloferax volcanii.	Ouellette M, Makkay AM, Papke RT.	Front Microbiol	10.3389/fmicb.2013.00376	2013
Phylogeny	Description of Lujinxingia vulgaris sp. nov., isolated from coastal sediment via prey-traps.	Wang S, Mu DS, Li GY, Du ZJ.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01640-5	2021
Phylogeny	Luteibaculum oceani gen. nov., sp. nov., a carotenoid-producing, lipolytic bacterium isolated from surface seawater, and emended description of the genus Owenweeksia Lau et al. 2005.	Shahina M, Hameed A, Lin SY, Lai WA, Liu YC, Hsu YH, Young CC.	Int J Syst Evol Microbiol	10.1099/ijs.0.054635-0	2013
Phylogeny	Natrinema salaciae sp. nov., a halophilic archaeon isolated from the deep, hypersaline anoxic Lake Medee in the Eastern Mediterranean Sea.	Albuquerque L, Taborda M, La Cono V, Yakimov M, da Costa MS.	Syst Appl Microbiol	10.1016/j.syapm.2012.06.005	2012
Phylogeny	Natrinema ejinorense sp. nov., isolated from a saline lake in Inner Mongolia, China.	Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.64421-0	2006
Phylogeny	Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China.	Xin H, Itoh T, Zhou P, Suzuki K, Kamekura M, Nakase T	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1297	2000

References

#6169	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16034
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natrinema versiforme (DSM 16034, ANMR 0149, AS 1.2365)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000337195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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