Strain identifier

BacDive ID: 5892

Type strain: Yes

Species: Natrinema versiforme

Strain Designation: XF10

Strain history: P. Zhou XF10.

NCBI tax ID(s): 1227496 (strain), 88724 (species)

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General

@ref: 6169

BacDive-ID: 5892

DSM-Number: 16034

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Natrinema versiforme XF10 is a mesophilic archaeon that was isolated from Aibi salt lake.

NCBI tax id

NCBI tax idMatching level
1227496strain
88724species

strain history

@refhistory
6169<- JCM <- P. Zhou, Chinese Acad. Sci. (CAS), Inst. Microbiol., Beijing, China; XF10
67770P. Zhou XF10.

doi: 10.13145/bacdive5892.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Natrialbales
  • family: Natrialbaceae
  • genus: Natrinema
  • species: Natrinema versiforme
  • full scientific name: Natrinema versiforme Xin et al. 2000

@ref: 6169

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Natrialbaceae

genus: Natrinema

species: Natrinema versiforme

full scientific name: Natrinema versiforme Xin et al. 2000

strain designation: XF10

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6169
  • name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/372
  • composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6169positivegrowth37mesophilic
67770positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6169Aibi salt lakeXinjiangChinaCHNAsia
67770Aibi salt lakeXinjiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187409.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68845;97_89574;98_121865;99_187409&stattab=map
  • Last taxonomy: Natrinema versiforme
  • 16S sequence: AB023426
  • Sequence Identity:
  • Total samples: 1
  • aquatic counts: 1

Safety information

risk assessment

  • @ref: 6169
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Natrinema versiforme gene for 16S rRNA, complete sequence, strain: JCM 10478AB6634651474ena88724
6169Natrinema versiforme gene for 16S ribosomal RNA, partial sequenceAB0234261438ena88724

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Natrinema versiforme JCM 104782554235502draftimg1227496
67770Natrinema versiforme JCM 10478GCA_000337195contigncbi1227496
66792Natrinema versiforme JCM 104781227496.3wgspatric1227496

GC content

  • @ref: 67770
  • GC-content: 64.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 6169

culture collection no.: DSM 16034, ANMR 0149, AS 1.2365, JCM 10478, CGMCC 1.2365

straininfo link

  • @ref: 75373
  • straininfo: 100801

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10843075Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China.Xin H, Itoh T, Zhou P, Suzuki K, Kamekura M, Nakase TInt J Syst Evol Microbiol10.1099/00207713-50-3-12972000Base Composition, China, Culture Media, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fresh Water/*microbiology, Genes, rRNA, Halobacteriaceae/*classification/genetics/isolation & purification/physiology/ultrastructure, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*metabolismCultivation
Phylogeny17082411Natrinema ejinorense sp. nov., isolated from a saline lake in Inner Mongolia, China.Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.64421-02006Base Composition, Carbohydrate Metabolism, China, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Gelatin/metabolism, Genes, rRNA, Halobacteriaceae/*classification/cytology/*isolation & purification/physiology, Hydrogen Sulfide/metabolism, Hydrogen-Ion Concentration, Lipids/analysis, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Saline Solution, Hypertonic, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Starch/metabolism, Temperature, *Water MicrobiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6169Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16034)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16034
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75373Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100801.1StrainInfo: A central database for resolving microbial strain identifiers