Name: Natrinema thermotolerans A29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5885

Type strain:

Species: Natrinema thermotolerans

Strain Designation: A29

Culture col. no.: DSM 18794, CECT 7218, JCM 14585, KCTC 4020, CCTCC AB 2015393

Strain history: <- SW Roh, KRIBB

NCBI tax ID(s): 121872 (species)

SI-ID 364147

CECT 7218, DSM 18794, JCM 14585, KCTC 4020

Section

Natrinema thermotolerans A29 is an aerobe, mesophilic archaeon that was isolated from shrimp jeotgal, a traditional fermented food.

aerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Natrinema*
	Species	**Natrinema thermotolerans**
	Full Scientific Name (LPSN)	Natrinema thermotolerans (Montalvo-Rodríguez et al. 2000) de la Haba et al. 2022

	Synonym	Haloterrigena jeotgali
	Synonym	Haloterrigena thermotolerans

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.962

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7700]

Culture medium

MEDIUM FOR H. DOMBROWSKII (DSMZ Medium 954)

[Ref.: #7700]

Culture medium growth

[Ref.: #7700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7700]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7700]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #7700]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.879

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7700]	Sample type/isolated from	shrimp jeotgal, a traditional fermented food
[Ref.: #7700]	Country	Republic of Korea
[Ref.: #7700]	Country ISO 3 Code	KOR
[Ref.: #7700]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Shrimp jeotgal, a traditional salt-fermented food from Korea

[Ref.: #67771]	Sample type/isolated from	From shrimp jeotgal, a traditional salt-fermented food
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Host	#Arthropoda	#Crustacea
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB663444 (>99% sequence identity) for Natrialbaceae from Microbeatlas

Aquatic Samples	5
Soil Samples	6
Animal Samples	1
Plant Samples
Total Samples	12

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7700]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7700]	Haloterrigena jeotgali strain A29 16S ribosomal RNA gene, partial sequence	EF077633	1344	ENA	413811 tax ID
[Ref.: #20218]	Haloterrigena jeotgali gene for 16S rRNA, complete sequence, strain: JCM 14585	AB663444	1473	ENA	413811 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Natrinema thermotolerans A29	GCA_000710605	contig	GenBank	1455609 tax ID
[Ref.: #66792]	Natrinema thermotolerans A29	GCA_004799625	complete	GenBank	121872 tax ID	*
[Ref.: #66792]	Haloterrigena jeotgali A29	2582580504	draft	JGI IMG/M	1455609 tax ID	*
[Ref.: #66792]	Haloterrigena jeotgali A29	2914868299	complete	JGI IMG/M	1455609 tax ID	*

[Ref.: #7700]	GC-content	62.3 mol%	fluorimetric
[Ref.: #67770]	GC-content	62.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloterrigena jeotgali A29 NCBI: GCA_004799625.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloterrigena jeotgali A29 NCBI: GCA_004799625.1
[Ref.: #69480]	motile	no	80.837	yes
[Ref.: #69480]	flagellated	no	96.107	yes
[Ref.: #69480]	gram-positive	no	97.154	yes
[Ref.: #69480]	anaerobic	no	95.91	yes
[Ref.: #69480]	aerobic	yes	85.279	yes
[Ref.: #69480]	halophile	yes	91.086	no
[Ref.: #69480]	spore-forming	no	91.712	no
[Ref.: #69480]	glucose-util	yes	87.962	no
[Ref.: #69480]	thermophile	no	89.453	yes
[Ref.: #69480]	glucose-ferment	no	82.776	no

Availability in culture collections External links

[Ref.: #7700]

Culture collection no.

DSM 18794, CECT 7218, JCM 14585, KCTC 4020, CCTCC AB 2015393

[Ref.: #75365]

SI-ID 364147

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food.	Roh SW, Nam YD, Chang HW, Kim KH, Sung Y, Kim MS, Oh HM, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.008243-0	2009	*

References

#7700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18794

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75365

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364147.1 )

* These data were automatically processed and therefore are not curated

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Haloterrigena jeotgali A29

Haloterrigena jeotgali A29

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