Name: Haloplanus natans RE-101
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5876

Type strain:

Species: Haloplanus natans

Strain Designation: RE-101

Culture col. no.: DSM 17983, JCM 14081, CGMCC 1.8972

Strain history: R. E. Bardavid RE-101.

NCBI tax ID(s): 926690 (strain), 376171 (species)

SI-ID 302760

DSM 17983, JCM 14081

Special Collections

Other strains from Haloplanus natans

Section

Haloplanus natans RE-101 is an aerobe, Gram-negative archaeon that was isolated from experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea.

Gram-negative
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Haloplanus*
	Species	**Haloplanus natans**
	Full Scientific Name (LPSN)	Haloplanus natans Bardavid et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31916]	Gram stain	negative

[Ref.: #31916]	Cell length	2.5-8 µm

[Ref.: #31916]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7315]

Culture medium

RE-101 MEDIUM (DSMZ Medium 1130)

[Ref.: #7315]

Culture medium growth

[Ref.: #7315]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7315]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7315]	growth	37 °C
[Ref.: #31916]	growth	37-52 °C
[Ref.: #31916]	optimum	40 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31916]			growth	6.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31916]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31916]		NaCl		growth	15.08-24.94	%
[Ref.: #31916]		NaCl		optimum	17.4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31916]	acetate ChEBI	+	carbon source
[Ref.: #31916]	glucose ChEBI	+	carbon source
[Ref.: #31916]	nitrate ChEBI	+	reduction
[Ref.: #31916]	ribose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31916]		catalase	+	1.11.1.6
[Ref.: #31916]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7315]	Sample type/isolated from	experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea
[Ref.: #7315]	Geographic location (country and/or sea, region)	Sedom
[Ref.: #7315]	Country	Israel
[Ref.: #7315]	Country ISO 3 Code	ISR
[Ref.: #7315]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea
[Ref.: #67770]	Country	Israel
[Ref.: #67770]	Country ISO 3 Code	ISR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7315]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7315]	Haloplanus natans strain RE 101 16S ribosomal RNA gene, complete sequence	DQ417339	1393	GenBank ENA	376171 tax ID
[Ref.: #20218]	Haloplanus natans strain JCM 14081 16S ribosomal RNA gene, partial sequence	JN206648	1471	GenBank ENA	376171 tax ID	*
[Ref.: #20218]	Haloplanus natans gene for 16S ribosomal RNA, partial sequence, strain: JCM 14081	AB477975	1431	GenBank ENA	376171 tax ID	*
[Ref.: #20218]	Haloplanus natans gene for 16S rRNA, complete sequence, strain: JCM 14081	AB663396	1471	GenBank ENA	376171 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloplanus natans DSM 17983	GCA_000427685	scaffold	GenBank ENA	926690 tax ID
[Ref.: #66792]	Haloplanus natans DSM 17983	2517287030	draft	JGI IMG/M	926690 tax ID	*
[Ref.: #66792]	Haloplanus natans DSM 17983	926690.3	wgs	PATRIC	926690 tax ID	*

[Ref.: #31916]	GC-content	66.2 mol%
[Ref.: #67770]	GC-content	66.2 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloplanus natans DSM 17983 DSM 17983 NCBI: GCA_000427685.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	96	no

Availability in culture collections External links

[Ref.: #7315]

Culture collection no.

DSM 17983, JCM 14081, CGMCC 1.8972

[Ref.: #75355]

SI-ID 302760

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus salinarum sp. nov., an extremely halophilic archaeon isolated from a solar saltern.	Hwang HB, Kim YE, Koh HW, Song HS, Roh SW, Kim SJ, Nam SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002313	2017	*
Phylogeny	Haloplanus litoreus sp. nov. and Haloplanus ruber sp. nov., from a marine solar saltern and an aquaculture farm, respectively.	Han D, Cui HL	Antonie Van Leeuwenhoek	10.1007/s10482-014-0123-6	2014	*
Phylogeny	Haloplanus salinus sp. nov., an extremely halophilic archaeon from a Chinese marine solar saltern.	Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL	Arch Microbiol	10.1007/s00203-013-0929-z	2013	*
Phylogeny	Haloplanus aerogenes sp. nov., an extremely halophilic archaeon from a marine solar saltern.	Cui HL, Gao X, Yang X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.025023-0	2010	*
Phylogeny	Haloplanus vescus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haloplanus.	Cui HL, Gao X, Li XY, Xu XW, Zhou YG, Liu HC, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.018564-0	2009	*
Phylogeny	Haloplanus natans gen. nov., sp. nov., an extremely halophilic, gas-vacuolate archaeon isolated from Dead Sea-Red Sea water mixtures in experimental outdoor ponds.	Bardavid RE, Mana L, Oren A	Int J Syst Evol Microbiol	10.1099/ijs.0.64648-0	2007	*

References

#7315

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17983

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31916

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28173 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75355

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302760.1 )

#28173

IJSEM 780 2007 ( DOI 10.1099/ijs.0.64648-0 , PubMed 17392206 )

* These data were automatically processed and therefore are not curated

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