Haloplanus natans (DSM 17983, JCM 14081, RE-101)

Name: Haloplanus natans (DSM 17983, JCM 14081, RE-101)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5876

Type strain

Strain Designation RE-101

Culture col. no. DSM 17983 JCM 14081 RE-101 CGMCC 1.8972

NCBI tax ID(s) 926690 376171

Special Collections DSMZ JCM Literature strains

History <- A. Oren, Hebrew Univ. Jerusalem, Israel; RE-101 <- R. E. Bardavid R. E. Bardavid RE-101.

Links

Haloplanus natans RE-101 is an aerobe, Gram-negative archaeon that was isolated from experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea.

Gram-negative aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 302760

DSM 17983,JCM 14081

@ref 20215

Last LPSN update 2026-02-09 11:19:04

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloplanus

Species Haloplanus natans

Full scientific name Haloplanus natans Bardavid et al. 2007

BacDive ID	Other strains from **Haloplanus natans** (2)	Type strain
5877	H. natans Re-102, DSM 17984
5878	H. natans Re-103, DSM 17985

Morphology

Cell morphology

@ref	Gram stain	Cell length
31916	negative	2.5-8 µm

Pigmentation

31916

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7315	RE-101 MEDIUM (DSMZ Medium 1130)		Medium recipe at MediaDive	Name: RE-101/102 MEDIUM (DSMZ Medium 1130) Composition: NaCl 175.0 g/l MgCl2 x 6 H2O 20.0 g/l Agar 15.0 g/l (optional) Yeast extract 5.0 g/l K2SO4 5.0 g/l CaCl2 x 2 H2O 0.1 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7315	positive	growth	37
31916	positive	growth	37-52
31916	positive	optimum	40
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
31916	positive	growth	6.5-8

Physiology and metabolism

Oxygen tolerance

31916

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31916	NaCl	positive	growth	15.08-24.94 %
31916	NaCl	positive	optimum	17.4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31916	30089 ChEBI	acetate	+	carbon source
31916	17234 ChEBI	glucose	+	carbon source
31916	17632 ChEBI	nitrate	+	reduction
31916	33942 ChEBI	ribose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31916	catalase	+	1.11.1.6
31916	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7315	experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea	Sedom	Israel	ISR	Asia
67770	Experimental mesocosm filled with a mixture of water from the Dead Sea and the Red Sea		Israel	ISR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7315	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42768v1 assembly for Haloplanus natans DSM 17983	scaffold	GCA_000427685	926690.3	2517287030	926690	76.13

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Haloplanus natans gene for 16S ribosomal RNA, partial sequence, strain: JCM 14081	AB477975	1431	376171
20218	Haloplanus natans gene for 16S rRNA, complete sequence, strain: JCM 14081	AB663396	1471	376171
20218	Haloplanus natans strain JCM 14081 16S ribosomal RNA gene, partial sequence	JN206648	1471	376171
7315	Haloplanus natans strain RE 101 16S ribosomal RNA gene, complete sequence	DQ417339	1393	376171

GC content

@ref	GC-content (mol%)	Method
31916	66.2
67770	66.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haloplanus natans DSM 17983
NCBI: GCA_000427685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.60	no
125439	motility	BacteriaNetⓘ	yes	57.20	no
125439	gram_stain	BacteriaNetⓘ	negative	74.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	82.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Divergent degeneration of creA antitoxin genes from minimal CRISPRs and the convergent strategy of tRNA-sequestering CreT toxins.	Cheng F, Wang R, Yu H, Liu C, Yang J, Xiang H, Li M.	Nucleic Acids Res	10.1093/nar/gkab821	2021
	Exploring tRNA gene cluster in archaea.	Morgado SM, Vicente ACP.	Mem Inst Oswaldo Cruz	10.1590/0074-02760180348	2019
Phylogeny	Sphaerotilus uruguayifluvii sp. nov., a novel filamentous bacterium isolated from river water.	Machin EV, Roldan DM, Menes RJ.	Antonie Van Leeuwenhoek	10.1007/s10482-024-01996-4	2024
Phylogeny	Haloplanus salinarum sp. nov., an extremely halophilic archaeon isolated from a solar saltern.	Hwang HB, Kim YE, Koh HW, Song HS, Roh SW, Kim SJ, Nam SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002313	2017
Phylogeny	Haloplanus litoreus sp. nov. and Haloplanus ruber sp. nov., from a marine solar saltern and an aquaculture farm, respectively.	Han D, Cui HL	Antonie Van Leeuwenhoek	10.1007/s10482-014-0123-6	2014
Phylogeny	Haloplanus salinus sp. nov., an extremely halophilic archaeon from a Chinese marine solar saltern.	Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL	Arch Microbiol	10.1007/s00203-013-0929-z	2013
Phylogeny	Haloplanus aerogenes sp. nov., an extremely halophilic archaeon from a marine solar saltern.	Cui HL, Gao X, Yang X, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.025023-0	2010
Phylogeny	Haloplanus vescus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haloplanus.	Cui HL, Gao X, Li XY, Xu XW, Zhou YG, Liu HC, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.018564-0	2009
Phylogeny	Haloplanus natans gen. nov., sp. nov., an extremely halophilic, gas-vacuolate archaeon isolated from Dead Sea-Red Sea water mixtures in experimental outdoor ponds.	Bardavid RE, Mana L, Oren A	Int J Syst Evol Microbiol	10.1099/ijs.0.64648-0	2007

References

#7315	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17983
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#28173	IJSEM 780 2007 ( DOI 10.1099/ijs.0.64648-0 , PubMed 17392206 )
#31916	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28173
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloplanus natans (DSM 17983, JCM 14081, RE-101)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000427685

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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