Halomicrobium mukohataei AL-5 | Type strain | DSM 19301, CECT 7257 | BacDiveID:5875

Strain identifier

BacDive ID: 5875

Type strain:

Species: Halomicrobium mukohataei

Strain Designation: AL-5

Culture col. no.: DSM 19301, CECT 7257

Strain history: <- M. Monteoliva-Sánchez, Univ. Granada, Campus Cartuja, Fac. Pharmacy, Spain <- C. Lizama; AL-5

NCBI tax ID(s): 1069082 (strain), 437163 (species)

Other strains from Halomicrobium mukohataei

H. mukohataei arg-2, DSM 12286, ATCC 700874, ... (type strain)

Section

Halomicrobium mukohataei AL-5 is an aerobe, thermophilic, Gram-negative archaeon that was isolated from Lake Tebenquiche.

Gram-negative
rod-shaped
aerobe
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Halomicrobium*
	Species	**Halomicrobium mukohataei**
	Full Scientific Name (LPSN)	Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002

	Synonym	Haloarcula mukohataei
	Synonym	Halomicrobium katesii

Information on morphological and physiological properties Morphology

[Ref.: #32543]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #32543]	Cell length	2.25-2.80 µm

[Ref.: #32543]	Cell width	1.80-2.25 µm

[Ref.: #32543]	Cell shape	rod-shaped

[Ref.: #32543]	Motility	no

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

HALOMICROBIUM KATESII MEDIUM (DSMZ Medium 1164)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8006]			growth	40 °C
[Ref.: #32543]			growth	35-50 °C
[Ref.: #32543]			optimum	37-40 °C

Temperature range

thermophilic

	pH	Kind of pH		pH
[Ref.: #32543]			optimum	7-7.5
[Ref.: #32543]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #32543]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.942

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32543]		NaCl		growth	20-30	%
[Ref.: #32543]		NaCl		optimum	25	%

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32543]		acetate ChEBI	+	carbon source
[Ref.: #32543]		cellobiose ChEBI	+	carbon source
[Ref.: #32543]		esculin ChEBI	+	hydrolysis
[Ref.: #32543]		fructose ChEBI	+	carbon source
[Ref.: #32543]		galactose ChEBI	+	carbon source
[Ref.: #32543]		glycerol ChEBI	+	carbon source
[Ref.: #32543]		maltose ChEBI	+	carbon source
[Ref.: #32543]		mannitol ChEBI	+	carbon source
[Ref.: #32543]		nitrate ChEBI	+	reduction
[Ref.: #32543]		pyruvate ChEBI	+	carbon source
[Ref.: #32543]		ribitol ChEBI	+	carbon source
[Ref.: #32543]		sorbitol ChEBI	+	carbon source
[Ref.: #32543]		trehalose ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32543]		catalase	+	1.11.1.6
[Ref.: #32543]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8006]	Sample type/isolated from	Lake Tebenquiche
[Ref.: #8006]	Geographic location (country and/or sea, region)	Atacama Saltern
[Ref.: #8006]	Country	Chile
[Ref.: #8006]	Country ISO 3 Code	CHL
[Ref.: #8006]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

Global distribution of 16S sequence JQ346761 (>99% sequence identity) for Halomicrobium from Microbeatlas

Aquatic Samples	10
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	13

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8006]	Halomicrobium katae strain Al-5 16S ribosomal RNA gene, partial sequence	EF533994	1419	ENA	1069082 tax ID
[Ref.: #20218]	Halomicrobium katesii 16S ribosomal RNA (rrn1) gene, partial sequence	JN120801	1473	ENA	437163 tax ID	*
[Ref.: #20218]	Halomicrobium katesii 16S ribosomal RNA (rrn2) gene, partial sequence	JN120802	1473	ENA	437163 tax ID	*
[Ref.: #20218]	Halomicrobium katesii 16S ribosomal RNA (rrn3) gene, partial sequence	JN120803	1473	ENA	437163 tax ID	*
[Ref.: #20218]	Halomicrobium katesii DSM 19301 strain Al-5 16S ribosomal RNA gene, partial sequence	JQ346761	1270	ENA	1069082 tax ID	*
[Ref.: #20218]	Halomicrobium katesii gene for 16S rRNA, complete sequence, strain: CECT 7257	AB663391	1473	ENA	437163 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomicrobium katesii DSM 19301	GCA_000379085	scaffold	GenBank	1069082 tax ID	*
[Ref.: #66792]	Halomicrobium katesii DSM 19301	2516653073	draft	JGI IMG/M	1069082 tax ID	*
[Ref.: #66792]	Halomicrobium katesii DSM 19301	1069082.6	wgs	PATRIC	1069082 tax ID	*

GC-content

52.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomicrobium katesii DSM 19301 DSM 19301 NCBI: GCA_000379085.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomicrobium katesii DSM 19301 DSM 19301 NCBI: GCA_000379085.1
[Ref.: #69480]	motile	no	77.524	no
[Ref.: #69480]	flagellated	no	94.441	yes
[Ref.: #69480]	gram-positive	no	96.775	no
[Ref.: #69480]	anaerobic	no	97.214	no
[Ref.: #69480]	aerobic	yes	88.764	yes
[Ref.: #69480]	halophile	yes	81.963	no
[Ref.: #69480]	spore-forming	no	91.167	no
[Ref.: #69480]	thermophile	no	74.128	no
[Ref.: #69480]	glucose-util	yes	91.287	no
[Ref.: #69480]	glucose-ferment	no	81.458	no

Availability in culture collections External links

Culture collection no.

DSM 19301, CECT 7257

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomicrobium zhouii sp. nov., a halophilic archaeon from a marine solar saltern.	Yang X, Cui HL	Int J Syst Evol Microbiol	10.1099/ijs.0.031989-0	2011	*
Phylogeny	Halomicrobium katesii sp. nov., an extremely halophilic archaeon.	Kharroub K, Lizama C, Aguilera M, Boulahrouf A, Campos V, Ramos-Cormenzana A, Monteoliva-Sanchez M	Int J Syst Evol Microbiol	10.1099/ijs.0.65662-0	2008	*

References

#8006

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19301

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32543

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28761 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28761

IJSEM 2354 2008 ( DOI 10.1099/ijs.0.65662-0 , PubMed 18842855 )

* These data were automatically processed and therefore are not curated

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