Haliangium ochraceum (DSM 14365, JCM 11303, AJ 13395)

Name: Haliangium ochraceum (DSM 14365, JCM 11303, AJ 13395)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5869

Type strain

Strain Designation SMP-2

Culture col. no. DSM 14365 JCM 11303 AJ 13395 SMP-2 CIP 107738

NCBI tax ID(s) 502025 80816

Special Collections DSMZ JCM CIP

Links

Haliangium ochraceum SMP-2 is a mesophilic prokaryote that was isolated from coastal sands.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100667

DSM 14365,JCM 11303,CIP 107738

@ref 20215

Last LPSN update 2025-12-16 09:48:10

Domain Pseudomonadati

Phylum Pseudomonadota

Class Deltaproteobacteria

Order Myxococcales

Family Kofleriaceae

Genus Haliangium

Species Haliangium ochraceum

Full scientific name Haliangium ochraceum Fudou et al. 2002

Morphology

Multimedia

@ref:	66793
multimedia content:	EM_DSM_14365_1.jpg
multimedia.multimedia content:	EM_DSM_14365_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5321	VY/4-SWS AGAR (DSMZ Medium 958)		Medium recipe at MediaDive	Name: VY/4-SWS AGAR (DSMZ Medium 958) Composition: NaCl 20.0 g/l Agar 15.0 g/l MgSO4 x 7 H2O 8.0 g/l Yeast cell paste 2.5 g/l CaCl2 x 2 H2O 1.0 g/l KCl 0.5 g/l NaHCO3 0.16 g/l KBr 0.08 g/l SrCl2 x 6 H2O 0.03 g/l Sodium beta-glycerophosphate 0.01 g/l Ferric citrate 0.01 g/l Cyanocobalamine 0.0005 g/l EDTA 0.0005 g/l FeSO4 x 7 H2O 0.0002 g/l H3BO3 3e-05 g/l CoCl2 x 6 H2O 2e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l Na2MoO4 x 2 H2O 3e-06 g/l MnCl2 x 4 H2O 3e-06 g/l NiCl2 x 6 H2O 2e-06 g/l CuCl2 x 2 H2O 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5321	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.5

Compound production

@ref	Compound
5321	haliangicin
5321	haliamide

Observation

67770

Observationquinones: MK-8

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	enterobactin biosynthesis	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	factor 420 biosynthesis	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	kanosamine biosynthesis II	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	starch degradation	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	cellulose degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	alanine metabolism	82.76	24 of 29
66794	proline metabolism	81.82	9 of 11
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	glutathione metabolism	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	vitamin B1 metabolism	76.92	10 of 13
66794	methionine metabolism	76.92	20 of 26
66794	ketogluconate metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	benzoyl-CoA degradation	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	arginine metabolism	70.83	17 of 24
66794	glycolysis	70.59	12 of 17
66794	cyanate degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	arachidonic acid metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	polyamine pathway	65.22	15 of 23
66794	lysine metabolism	64.29	27 of 42
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	urea cycle	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	oxidative phosphorylation	60.44	55 of 91
66794	carotenoid biosynthesis	59.09	13 of 22
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	lipid A biosynthesis	55.56	5 of 9
66794	lipid metabolism	54.84	17 of 31
66794	d-xylose degradation	54.55	6 of 11
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	ribulose monophosphate pathway	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	coenzyme M biosynthesis	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	butanoate fermentation	50	2 of 4
66794	vitamin E metabolism	50	2 of 4
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	sulfate reduction	46.15	6 of 13
66794	phenol degradation	45	9 of 20
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	D-cycloserine biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of sugar acids	40	10 of 25
66794	arachidonate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	ascorbate metabolism	36.36	8 of 22
66794	cholesterol biosynthesis	36.36	4 of 11
66794	allantoin degradation	33.33	3 of 9
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	chlorophyll metabolism	22.22	4 of 18
66794	vitamin B12 metabolism	20.59	7 of 34

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5321	coastal sands	Kanagawa	Japan	JPN	Asia
67770	Dry Laminariales seaweed sample collected from a sandy beach (Aburatsubo-wan) of the Miura Peninsula		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB016470 (>99% sequence identity) for Haliangium ochraceum subclade from Microbeatlas

Aquatic Samples	560
Soil Samples	336
Animal Samples	18
Plant Samples	67
Total Samples	981

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5321	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2480v1 assembly for Haliangium ochraceum DSM 14365	complete	GCA_000024805	502025.10	646311933	502025	95.1

Genome browser: GCA_000024805

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Haliangium ochraceum gene for 16S rRNA, partial sequence	AB016470	1507		502025

GC content

@ref	GC-content (mol%)
5321	67
67770	67

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haliangium ochraceum DSM 14365
PATRIC: 502025.10

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	71.70	no
125439	motility	BacteriaNetⓘ	yes	54.90	no
125439	gram_stain	BacteriaNetⓘ	positive	71.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Haliangium ochraceum DSM 14365 DSM 14365
NCBI: GCA_000024805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	83.82	no
125438	anaerobic	anaerobicⓘ	no	82.54	no
125438	aerobic	aerobicⓘ	yes	73.19	no
125438	spore-forming	spore-formingⓘ	no	68.60	no
125438	thermophilic	thermophileⓘ	no	86.55	no
125438	flagellated	motile2+ⓘ	no	54.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Creating a consensus genome assembly of Myxococcus xanthus DZ2 by resolving discrepancies between two complete genomes of the same strain and uncovering the Mx-alpha prophage region diversity across phylum Myxococcota.	Mahanta U, Sharma G.	NAR Genom Bioinform	10.1093/nargab/lqaf112	2025
	Type III-B CRISPR-Cas cascade of proteolytic cleavages.	Steens JA, Bravo JPK, Salazar CRP, Yildiz C, Amieiro AM, Kostlbacher S, Prinsen SHP, Andres AS, Patinios C, Bardis A, Barendregt A, Scheltema RA, Ettema TJG, van der Oost J, Taylor DW, Staals RHJ.	Science	10.1126/science.adk0378	2024
Genetics	Comparative genomic insight into the myxobacterial carbohydrate-degrading potential.	Saraf N, Sharma G.	Front Microbiol	10.3389/fmicb.2025.1550287	2025
Genetics	A Global Comprehensive Study of the Distribution of Type I-E and Type I-E* CRISPR-Cas Systems in Klebsiella pneumoniae.	Kannadasan AB, Sumantran VN, Vaidyanathan R.	Indian J Community Med	10.4103/ijcm.ijcm_486_22	2023
	The soil microbial food web revisited: Predatory myxobacteria as keystone taxa?	Petters S, Gross V, Sollinger A, Pichler M, Reinhard A, Bengtsson MM, Urich T.	ISME J	10.1038/s41396-021-00958-2	2021
Genetics	Assembly strategies for rubber-degrading microbial consortia based on omics tools.	Cui C, Jiang M, Zhang C, Zhang N, Jin FJ, Li T, Lee HG, Jin L.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1326395	2023
Metabolism	Metabolic and Biosynthetic Diversity in Marine Myxobacteria.	Gemperlein K, Zaburannyi N, Garcia R, La Clair JJ, Muller R.	Mar Drugs	10.3390/md16090314	2018
	Complete genome sequence of natural rubber-degrading, gram-negative bacterium, Rhizobacter gummiphilus strain NS21^T.	Linh DV, Gibu N, Tabata M, Imai S, Hosoyama A, Yamazoe A, Kasai D, Fukuda M.	Biotechnol Rep (Amst)	10.1016/j.btre.2019.e00332	2019
	Bioinformatics analysis of bacterial annexins--putative ancestral relatives of eukaryotic annexins.	Kodavali PK, Dudkiewicz M, Pikula S, Pawlowski K.	PLoS One	10.1371/journal.pone.0085428	2014
Genetics	Genomes of Novel Myxococcota Reveal Severely Curtailed Machineries for Predation and Cellular Differentiation.	Murphy CL, Yang R, Decker T, Cavalliere C, Andreev V, Bircher N, Cornell J, Dohmen R, Pratt CJ, Grinnell A, Higgs J, Jett C, Gillett E, Khadka R, Mares S, Meili C, Liu J, Mukhtar H, Elshahed MS, Youssef NH.	Appl Environ Microbiol	10.1128/aem.01706-21	2021
Genetics	Comparative genomics and transcriptomics insight into myxobacterial metabolism potentials and multiple predatory strategies.	Wang C, Xiao Y, Wang Y, Liu Y, Yao Q, Zhu H.	Front Microbiol	10.3389/fmicb.2023.1146523	2023
Genetics	HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.	Nuccio EE, Blazewicz SJ, Lafler M, Campbell AN, Kakouridis A, Kimbrel JA, Wollard J, Vyshenska D, Riley R, Tomatsu A, Hestrin R, Malmstrom RR, Firestone M, Pett-Ridge J.	Microbiome	10.1186/s40168-022-01391-z	2022
	Enhanced leachate phytodetoxification test combined with plants and rhizobacteria bioaugmentation.	Arliyani I, Tangahu BV, Mangkoedihardjo S, Zulaika E, Kurniawan SB.	Heliyon	10.1016/j.heliyon.2023.e12921	2023
Genetics	Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics.	Garcia R, La Clair JJ, Muller R.	Mar Drugs	10.3390/md16090303	2018
Phylogeny	Multiple classes and isoforms of the RNA polymerase recycling motor protein HelD.	Larsen JS, Miller M, Oakley AJ, Dixon NE, Lewis PJ.	Microbiologyopen	10.1002/mbo3.1251	2021
Phylogeny	Genome-wide analysis of myxobacterial two-component systems: genome relatedness and evolutionary changes.	Whitworth DE.	BMC Genomics	10.1186/s12864-015-2018-y	2015
Metabolism	luxR Homolog-Linked Biosynthetic Gene Clusters in Proteobacteria.	Brotherton CA, Medema MH, Greenberg EP.	mSystems	10.1128/msystems.00208-17	2018
Metabolism	Identification of Critical Amino Acids Conferring Lethality in VopK, a Type III Effector Protein of Vibrio cholerae: Lessons from Yeast Model System.	Bankapalli LK, Mishra RC, Singh B, Raychaudhuri S.	PLoS One	10.1371/journal.pone.0141038	2015
Phylogeny	Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria.	Brinkhoff T, Fischer D, Vollmers J, Voget S, Beardsley C, Thole S, Mussmann M, Kunze B, Wagner-Dobler I, Daniel R, Simon M.	ISME J	10.1038/ismej.2011.190	2012
Genetics	CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers.	Pourcel C, Touchon M, Villeriot N, Vernadet JP, Couvin D, Toffano-Nioche C, Vergnaud G.	Nucleic Acids Res	10.1093/nar/gkz915	2020
Metabolism	Functional Analysis of a Novel beta-(1,3)-Glucanase from Corallococcus sp. Strain EGB Containing a Fascin-Like Module.	Zhou J, Li Z, Wu J, Li L, Li D, Ye X, Luo X, Huang Y, Cui Z, Cao H.	Appl Environ Microbiol	10.1128/aem.01016-17	2017
Phylogeny	In silico functional and evolutionary analyses of rubber oxygenases (RoxA and RoxB).	Sharma V, Mobeen F, Prakash T.	3 Biotech	10.1007/s13205-020-02371-6	2020
Metabolism	Production of zosteric acid and other sulfated phenolic biochemicals in microbial cell factories.	Jendresen CB, Nielsen AT.	Nat Commun	10.1038/s41467-019-12022-x	2019
Phylogeny	Comparative Genomics of Myxobacterial Chemosensory Systems.	Sharma G, Khatri I, Subramanian S.	J Bacteriol	10.1128/jb.00620-17	2018
Genetics	Genome neighborhood network reveals insights into enediyne biosynthesis and facilitates prediction and prioritization for discovery.	Rudolf JD, Yan X, Shen B.	J Ind Microbiol Biotechnol	10.1007/s10295-015-1671-0	2016
Metabolism	Genetic manipulation and tools in myxobacteria for the exploitation of secondary metabolism.	Yue X, Sheng D, Zhuo L, Li YZ.	Eng Microbiol	10.1016/j.engmic.2023.100075	2023
Enzymology	Functional identification of rubber oxygenase (RoxA) in soil and marine myxobacteria.	Birke J, Rother W, Schmitt G, Jendrossek D.	Appl Environ Microbiol	10.1128/aem.02194-13	2013
Genetics	Mining of Microbial Genomes for the Novel Sources of Nitrilases.	Sharma N, Thakur N, Raj T, Savitri, Bhalla TC.	Biomed Res Int	10.1155/2017/7039245	2017
Genetics	Marine-derived myxobacteria of the suborder Nannocystineae: An underexplored source of structurally intriguing and biologically active metabolites.	Davila-Cespedes A, Hufendiek P, Crusemann M, Schaberle TF, Konig GM.	Beilstein J Org Chem	10.3762/bjoc.12.96	2016
	Cyclic Di-GMP Regulates Type IV Pilus-Dependent Motility in Myxococcus xanthus.	Skotnicka D, Petters T, Heering J, Hoppert M, Kaever V, Sogaard-Andersen L.	J Bacteriol	10.1128/jb.00281-15	2016
Genetics	Unlocking the mystery of the hard-to-sequence phage genome: PaP1 methylome and bacterial immunity.	Lu S, Le S, Tan Y, Li M, Liu C, Zhang K, Huang J, Chen H, Rao X, Zhu J, Zou L, Ni Q, Li S, Wang J, Jin X, Hu Q, Yao X, Zhao X, Zhang L, Huang G, Hu F.	BMC Genomics	10.1186/1471-2164-15-803	2014
Enzymology	The crystal structure of the core domain of a cellulose induced protein (Cip1) from Hypocrea jecorina, at 1.5 Å resolution.	Jacobson F, Karkehabadi S, Hansson H, Goedegebuur F, Wallace L, Mitchinson C, Piens K, Stals I, Sandgren M.	PLoS One	10.1371/journal.pone.0070562	2013
	Veillonella, Firmicutes: Microbes disguised as Gram negatives.	Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.	Stand Genomic Sci	10.4056/sigs.2981345	2013
Metabolism	Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type-I Polyketide Synthases Derived from Marine Microbiomes.	Amoutzias GD, Chaliotis A, Mossialos D.	Mar Drugs	10.3390/md14040080	2016
Transcriptome	In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria.	Marsh AJ, O'Sullivan O, Ross RP, Cotter PD, Hill C.	BMC Genomics	10.1186/1471-2164-11-679	2010
Genetics	Biotechnological applications of functional metagenomics in the food and pharmaceutical industries.	Coughlan LM, Cotter PD, Hill C, Alvarez-Ordonez A.	Front Microbiol	10.3389/fmicb.2015.00672	2015
Metabolism	Use of a phosphonate methyltransferase in the identification of the fosfazinomycin biosynthetic gene cluster.	Gao J, Ju KS, Yu X, Velasquez JE, Mukherjee S, Lee J, Zhao C, Evans BS, Doroghazi JR, Metcalf WW, van der Donk WA.	Angew Chem Int Ed Engl	10.1002/anie.201308363	2014
	Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements.	Bernheim A, Bikard D, Touchon M, Rocha EPC.	Nucleic Acids Res	10.1093/nar/gkz1091	2020
	Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors.	Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A.	Biomed Res Int	10.1155/2015/786861	2015
	Land-use influences the distribution and activity of high affinity CO-oxidizing bacteria associated to type I-coxL genotype in soil.	Quiza L, Lalonde I, Guertin C, Constant P.	Front Microbiol	10.3389/fmicb.2014.00271	2014
	CRISPRs: molecular signatures used for pathogen subtyping.	Shariat N, Dudley EG.	Appl Environ Microbiol	10.1128/aem.02790-13	2014
Metabolism	Function and regulation of clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR associated (Cas) systems.	Richter C, Chang JT, Fineran PC.	Viruses	10.3390/v4102291	2012
	Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.	Bromberg R, Grishin NV, Otwinowski Z.	PLoS Comput Biol	10.1371/journal.pcbi.1004985	2016
Metabolism	Sibling Rivalry in Myxococcus xanthus Is Mediated by Kin Recognition and a Polyploid Prophage.	Dey A, Vassallo CN, Conklin AC, Pathak DT, Troselj V, Wall D.	J Bacteriol	10.1128/jb.00964-15	2016
Metabolism	Terminal alkene formation by the thioesterase of curacin A biosynthesis: structure of a decarboxylating thioesterase.	Gehret JJ, Gu L, Gerwick WH, Wipf P, Sherman DH, Smith JL.	J Biol Chem	10.1074/jbc.m110.214635	2011
Metabolism	CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.	Biswas A, Gagnon JN, Brouns SJ, Fineran PC, Brown CM.	RNA Biol	10.4161/rna.24046	2013
	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jimenez-Garcia B, Moal IH, Fernandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ.	Proteins	10.1002/prot.25007	2016
	Methods of combinatorial optimization to reveal factors affecting gene length.	Bolshoy A, Tatarinova T.	Bioinform Biol Insights	10.4137/bbi.s10525	2012
Genetics	A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle.	Gillespie JJ, Joardar V, Williams KP, Driscoll T, Hostetler JB, Nordberg E, Shukla M, Walenz B, Hill CA, Nene VM, Azad AF, Sobral BW, Caler E.	J Bacteriol	10.1128/jb.06244-11	2012
Enzymology	Identification and characterization of a putative arginine kinase homolog from Myxococcus xanthus required for fruiting body formation and cell differentiation.	Bragg J, Rajkovic A, Anderson C, Curtis R, Van Houten J, Begres B, Naples C, Snider M, Fraga D, Singer M.	J Bacteriol	10.1128/jb.06435-11	2012
	A taxonomy of bacterial microcompartment loci constructed by a novel scoring method.	Axen SD, Erbilgin O, Kerfeld CA.	PLoS Comput Biol	10.1371/journal.pcbi.1003898	2014
Phylogeny	Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group.	Kadnikov VV, Mardanov AV, Podosokorskaya OA, Gavrilov SN, Kublanov IV, Beletsky AV, Bonch-Osmolovskaya EA, Ravin NV.	PLoS One	10.1371/journal.pone.0053047	2013
Genetics	Novel LanT associated lantibiotic clusters identified by genome database mining.	Singh M, Sareen D.	PLoS One	10.1371/journal.pone.0091352	2014
Metabolism	Insights from the sea: structural biology of marine polyketide synthases.	Akey DL, Gehret JJ, Khare D, Smith JL.	Nat Prod Rep	10.1039/c2np20016c	2012
	Diverse CRISPRs evolving in human microbiomes.	Rho M, Wu YW, Tang H, Doak TG, Ye Y.	PLoS Genet	10.1371/journal.pgen.1002441	2012
	The evolution of new lipoprotein subunits of the bacterial outer membrane BAM complex.	Anwari K, Webb CT, Poggio S, Perry AJ, Belousoff M, Celik N, Ramm G, Lovering A, Sockett RE, Smit J, Jacobs-Wagner C, Lithgow T.	Mol Microbiol	10.1111/j.1365-2958.2012.08059.x	2012
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Genetics	Active site and laminarin binding in glycoside hydrolase family 55.	Bianchetti CM, Takasuka TE, Deutsch S, Udell HS, Yik EJ, Bergeman LF, Fox BG.	J Biol Chem	10.1074/jbc.m114.623579	2015
Phylogeny	Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses.	Baudoux AC, Hendrix RW, Lander GC, Bailly X, Podell S, Paillard C, Johnson JE, Potter CS, Carragher B, Azam F.	Environ Microbiol	10.1111/j.1462-2920.2011.02685.x	2012
	Abyssomicin biosynthesis: formation of an unusual polyketide, antibiotic-feeding studies and genetic analysis.	Gottardi EM, Krawczyk JM, von Suchodoletz H, Schadt S, Muhlenweg A, Uguru GC, Pelzer S, Fiedler HP, Bibb MJ, Stach JE, Sussmuth RD.	Chembiochem	10.1002/cbic.201100172	2011
	Solving the Problem: Genome Annotation Standards before the Data Deluge.	Klimke W, O'Donovan C, White O, Brister JR, Clark K, Fedorov B, Mizrachi I, Pruitt KD, Tatusova T.	Stand Genomic Sci	10.4056/sigs.2084864	2011
Phylogeny	Analysis of the Genome and Metabolome of Marine Myxobacteria Reveals High Potential for Biosynthesis of Novel Specialized Metabolites.	Amiri Moghaddam J, Crusemann M, Alanjary M, Harms H, Davila-Cespedes A, Blom J, Poehlein A, Ziemert N, Konig GM, Schaberle TF	Sci Rep	10.1038/s41598-018-34954-y	2018
Biotechnology	Heterologous Production of the Marine Myxobacterial Antibiotic Haliangicin and Its Unnatural Analogues Generated by Engineering of the Biochemical Pathway.	Sun Y, Feng Z, Tomura T, Suzuki A, Miyano S, Tsuge T, Mori H, Suh JW, Iizuka T, Fudou R, Ojika M	Sci Rep	10.1038/srep22091	2016
Metabolism	Isolation and Biosynthetic Analysis of Haliamide, a New PKS-NRPS Hybrid Metabolite from the Marine Myxobacterium Haliangium ochraceum.	Sun Y, Tomura T, Sato J, Iizuka T, Fudou R, Ojika M	Molecules	10.3390/molecules21010059	2016
Phylogeny	A novel family VII esterase with industrial potential from compost metagenomic library.	Kang CH, Oh KH, Lee MH, Oh TK, Kim BH, Yoon J	Microb Cell Fact	10.1186/1475-2859-10-41	2011
Genetics	Investigation of cytochromes P450 in myxobacteria: excavation of cytochromes P450 from the genome of Sorangium cellulosum So ce56.	Khatri Y, Hannemann F, Perlova O, Muller R, Bernhardt R	FEBS Lett	10.1016/j.febslet.2011.04.035	2011
Genetics	Complete genome sequence of Haliangium ochraceum type strain (SMP-2).	Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Pati A, Mikhailova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Markowitz V, Eisen JA, Hugenholtz P, Kyrpides NC, Klenk HP	Stand Genomic Sci	10.4056/sigs.69.1277	2010
Cultivation	Characteristics and living patterns of marine myxobacterial isolates.	Zhang YQ, Li YZ, Wang B, Wu ZH, Zhang CY, Gong X, Qiu ZJ, Zhang Y	Appl Environ Microbiol	10.1128/AEM.71.6.3331-3336.2005	2005
Phylogeny	Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: novel moderately halophilic myxobacteria isolated from coastal saline environments.	Fudou R, Jojima Y, Iizuka T, Yamanaka S	J Gen Appl Microbiol	10.2323/jgam.48.109	2002

References

#5321	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14365
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haliangium ochraceum (DSM 14365, JCM 11303, AJ 13395)

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