Name: Chryseobacterium ureilyticum F-Fue-04IIIaaaa
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5701

Type strain:

Species: Chryseobacterium ureilyticum

Strain Designation: F-Fue-04IIIaaaa

Culture col. no.: DSM 18017, CCUG 52546, CIP 110146

Strain history: CIP <- 2010, CCUG <- 2006, A. Lipski, Osnabrück Univ., Osnabrück, Germany: strain F-Fue-04IIIaaaa

NCBI tax ID(s): 373668 (species)

SI-ID 377001

DSM 18017, CCUG 52546, LMG 25629, CIP 110146

Special Collections

Other strains from Chryseobacterium ureilyticum

Section

Chryseobacterium ureilyticum F-Fue-04IIIaaaa is an aerobe, Gram-negative bacterium that was isolated from steel surface of a beer-bottling plant.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium ureilyticum**
	Full Scientific Name (LPSN)	Chryseobacterium ureilyticum Herzog et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31941]	Gram stain	negative
[Ref.: #32348]	Gram stain	negative
[Ref.: #123745]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.955

[Ref.: #31941]	Cell length	1.4 µm
[Ref.: #32348]	Cell length	2 µm

[Ref.: #31941]	Cell width	0.7 µm
[Ref.: #32348]	Cell width	0.7 µm

[Ref.: #31941]	Motility	no
[Ref.: #32348]	Motility	no
[Ref.: #123745]	Motility	no

[Ref.: #32348]	Cell shape	rod-shaped
[Ref.: #123745]	Cell shape	rod-shaped

[Ref.: #32348]	Pigment production	yes
[Ref.: #31941]	Pigment production	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7345]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #7345]

Culture medium growth

[Ref.: #7345]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7345]

Culture medium composition

expand / minimize

[Ref.: #39840]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #39840]

Culture medium growth

[Ref.: #39840]

Culture medium composition

expand / minimize

[Ref.: #123745]

Culture medium

CIP Medium 72

[Ref.: #123745]

Culture medium growth

[Ref.: #123745]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7345]	growth	28 °C
[Ref.: #31941]	growth	15-42 °C
[Ref.: #31941]	optimum	28.5 °C
[Ref.: #32348]	growth	25-30 °C
[Ref.: #39840]	growth	30 °C
[Ref.: #59589]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31941]			optimum	7
[Ref.: #31941]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32348]	Oxygen tolerance	aerobe
[Ref.: #31941]	Oxygen tolerance	aerobe
[Ref.: #59589]	Oxygen tolerance	aerobe
[Ref.: #123745]	Oxygen tolerance	obligate aerobe

[Ref.: #31941]	Ability of spore formation	no
[Ref.: #32348]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt		Salt conc.
[Ref.: #32348]	NaCl	growth	<2	%
[Ref.: #31941]	NaCl	growth	0-0.9	%
[Ref.: #31941]	NaCl	optimum	0.45	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31941]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31941]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32348]	esculin ChEBI	+	hydrolysis
[Ref.: #31941]	fucose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31941]	gluconate ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	glucose ChEBI	+	carbon source
[Ref.: #32348]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	maltose ChEBI	+	carbon source
[Ref.: #32348]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31941]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123745]	nitrate ChEBI	-	reduction
[Ref.: #123745]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	proline ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	rhamnose ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	salicin ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31941]	sorbitol ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32348]		indole ChEBI	yes
[Ref.: #123745]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #32348]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31941]	catalase	+	1.11.1.6
[Ref.: #32348]	catalase	+	1.11.1.6
[Ref.: #123745]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31941]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32348]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #32348]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123745]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #31941]	urease	+	3.5.1.5
[Ref.: #32348]	urease	+	3.5.1.5
[Ref.: #123745]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123745]	11708	not determinedn.d.	+/-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	+/-	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123745]	12396	-	+	-	+	-	+	+	-	+	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7345]	Sample type/isolated from	steel surface of a beer-bottling plant
[Ref.: #7345]	Country	Germany
[Ref.: #7345]	Country ISO 3 Code	DEU
[Ref.: #7345]	Continent	Europe

[Ref.: #59589]	Sample type/isolated from	Steel surface of a beer bottling plant
[Ref.: #59589]	Sampling date	2004-07-01
[Ref.: #59589]	Country	Germany
[Ref.: #59589]	Country ISO 3 Code	DEU
[Ref.: #59589]	Continent	Europe

[Ref.: #123745]	Sample type/isolated from	Steel surface of a beer bottling plant
[Ref.: #123745]	Geographic location (country and/or sea, region)	Osnabrück
[Ref.: #123745]	Country	Germany
[Ref.: #123745]	Country ISO 3 Code	DEU
[Ref.: #123745]	Continent	Europe
[Ref.: #123745]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Fermented
#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Food production	#Beverage

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7345]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123745]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7345]	Chryseobacterium ureilyticum partial 16S rRNA gene, type strain F-Fue-04IIIaaaaT	AM232806	1472	GenBank ENA	373668 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium ureilyticum DSM 18017	GCA_900156735	contig	GenBank ENA	373668 tax ID	*
[Ref.: #66792]	Chryseobacterium ureilyticum strain DSM 18017	373668.4	wgs	PATRIC	373668 tax ID	*
[Ref.: #66792]	Chryseobacterium ureilyticum DSM 18017	2681813509	draft	JGI IMG/M	373668 tax ID	*

[Ref.: #32348]	GC-content	36.4 mol%
[Ref.: #31941]	GC-content	48.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium ureilyticum strain DSM 18017 PATRIC: 373668.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium ureilyticum strain DSM 18017 PATRIC: 373668.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.955	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.795	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.169	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.671	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.481	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	yes

Availability in culture collections External links

[Ref.: #7345]

Culture collection no.

DSM 18017, CCUG 52546, CIP 110146

[Ref.: #75183]

SI-ID 377001

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium phosphatilyticum sp. nov., a phosphate-solubilizing endophyte isolated from cucumber (Cucumis sativus L.) root.	Jeong JJ, Sang MK, Lee DW, Choi IG, Kim KD	Int J Syst Evol Microbiol	10.1099/ijsem.0.003091	2018	*
Phylogeny	Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.	Venil CK, Nordin N, Zakaria ZA, Ahmad WA	Int J Syst Evol Microbiol	10.1099/ijs.0.063594-0	2014	*
Phylogeny	Chryseobacterium viscerum sp. nov., isolated from diseased fish.	Zamora L, Vela AI, Palacios MA, Sanchez-Porro C, Svensson-Stadler LA, Dominguez L, Moore ERB, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.036699-0	2012	*
Phylogeny	Chryseobacterium oncorhynchi sp. nov., isolated from rainbow trout (Oncorhynchus mykiss).	Zamora L, Fernandez-Garayzabal JF, Palacios MA, Sanchez-Porro C, Svensson-Stadler LA, Dominguez L, Moore ER, Ventosa A, Vela AI	Syst Appl Microbiol	10.1016/j.syapm.2011.10.002	2011	*
Phylogeny	Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants.	Herzog P, Winkler I, Wolking D, Kampfer P, Lipski A	Int J Syst Evol Microbiol	10.1099/ijs.0.65362-0	2008	*

References

#7345

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18017

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31941

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28197 (see below)

#32348

#39840 ; Curators of the CIP;
#59589 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52546

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75183

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377001.1 )

#123745 Collection of Institut Pasteur ; Curators of the CIP; CIP 110146

#28197

IJSEM 1396 2007 ( DOI 10.1099/ijs.0.64688-0 , PubMed 17625164 )

#28579

IJSEM 26 2008 ( DOI 10.1099/ijs.0.65362-0 , PubMed 18175677 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium ureilyticum in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Chryseobacterium ureilyticum strain DSM 18017

Chryseobacterium ureilyticum strain DSM 18017

Change proposal

Change proposal