Chryseobacterium pallidum (DSM 18015, CCUG 52548, 26-3St2b)

Name: Chryseobacterium pallidum (DSM 18015, CCUG 52548, 26-3St2b)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5700

Type strain

Strain Designation 26-3St2b

Culture col. no. DSM 18015 CCUG 52548 26-3St2b

NCBI tax ID(s) 373671

Special Collections DSMZ CCUG Literature strains

History DSMZ <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; 26-3St2b <- I. Winkler

Links

Chryseobacterium pallidum 26-3St2b is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from steel surface of a beer-bottling plant.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 323957

CCUG 52548,DSM 18015,LMG 25631

@ref 20215

Last LPSN update 2026-05-29 08:26:14

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium pallidum

Full scientific name Chryseobacterium pallidum Herzog et al. 2008

Synonyms (1)

Epilithonimonas pallida

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
32348	negative	1.3 µm	0.8 µm	rod-shaped
125439	negative					99.783

Pigmentation

32348

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7334	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7334	positive	growth	28
32348	positive	growth	25-37
59591	positive	growth	30-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32348	aerobe
59591	aerobe
125439	obligate aerobe	95.704

Spore formation

@ref	Spore formation	Confidence
32348
125439		99.841

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32348	NaCl	positive	growth	<1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32348	17128 ChEBI	adipate	+	carbon source
32348	22599 ChEBI	arabinose	+	carbon source
32348	4853 ChEBI	esculin	+	hydrolysis
32348	17234 ChEBI	glucose	+	carbon source
32348	25115 ChEBI	malate	+	carbon source
32348	17306 ChEBI	maltose	+	carbon source
32348	37684 ChEBI	mannose	+	carbon source
32348	17632 ChEBI	nitrate	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32348	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
32348	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
32348	catalase	+	1.11.1.6
32348	cytochrome oxidase	+	1.9.3.1
32348	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Fermented
#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Food production	#Beverage

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
7334	steel surface of a beer-bottling plant		Germany	DEU	Europe
59591	Steel surface of a beer bottling plant	2002-08-01	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM232809 (>99% sequence identity) for Epilithonimonas from Microbeatlas

Aquatic Samples	79
Soil Samples	16
Animal Samples	136
Plant Samples	31
Total Samples	262

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7334	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4265450v1 assembly for Epilithonimonas pallida CCUG 52548	scaffold	GCA_042654505			373671	75.3
124043	IMG-taxon 2681813503 annotated assembly for Epilithonimonas pallida DSM 18015	contig	GCA_900182975	373671.4	2681813503	373671	75.26

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7334	Chryseobacterium pallidum partial 16S rRNA gene, type strain 26-3St2bT	AM232809	1468		373671

GC content

32348

GC-content (mol%)38.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265450v1 assembly for Epilithonimonas pallida CCUG 52548
NCBI: GCA_042654505

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.78	no
125439	motility	BacteriaNetⓘ	no	85.89	no
125439	spore_formation	BacteriaNetⓘ	no	99.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome and description of Chryseobacterium manosquense strain Marseille-Q2069^T sp. nov., a new bacterium isolated from human healthy skin.	Boxberger M, Ben Khedher M, Magnien S, Cassir N, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2020.100805	2020
Phylogeny	Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants.	Herzog P, Winkler I, Wolking D, Kampfer P, Lipski A	Int J Syst Evol Microbiol	10.1099/ijs.0.65362-0	2008

References

#7334	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18015
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28579	IJSEM 26 2008 ( DOI 10.1099/ijs.0.65362-0 , PubMed 18175677 )
#32348	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28579
#59591	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52548
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium pallidum (DSM 18015, CCUG 52548, 26-3St2b)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042654505

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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