Name: Chryseobacterium pallidum 26-3St2b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5700

Type strain:

Species: Chryseobacterium pallidum

Strain Designation: 26-3St2b

Culture col. no.: DSM 18015, CCUG 52548

Strain history: <- A. Lipski, School of Biology/Chemistry, Univ. Osnabrück, Germany; 26-3St2b <- I. Winkler

NCBI tax ID(s): 373671 (species)

SI-ID 323957

CCUG 52548, DSM 18015, LMG 25631

Section

Chryseobacterium pallidum 26-3St2b is an aerobe, mesophilic, Gram-negative bacterium that was isolated from steel surface of a beer-bottling plant.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium pallidum**
	Full Scientific Name (LPSN)	Chryseobacterium pallidum Herzog et al. 2008

Synonym

Epilithonimonas pallida

Information on morphological and physiological properties Morphology

[Ref.: #32348]	Gram stain	negative

[Ref.: #32348]	Cell length	1.3 µm

[Ref.: #32348]	Cell width	0.8 µm

[Ref.: #32348]	Cell shape	rod-shaped

[Ref.: #32348]	Motility	no

[Ref.: #32348]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7334]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #7334]

Culture medium growth

[Ref.: #7334]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7334]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7334]	growth	28 °C
[Ref.: #32348]	growth	25-37 °C
[Ref.: #59591]	growth	30-37 °C

[Ref.: #7334]	Temperature range	mesophilic
[Ref.: #32348]	Temperature range	mesophilic
[Ref.: #59591]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32348]	Oxygen tolerance	aerobe
[Ref.: #59591]	Oxygen tolerance	aerobe

[Ref.: #32348]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32348]		NaCl		growth	<1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32348]	adipate ChEBI	+	carbon source
[Ref.: #32348]	arabinose ChEBI	+	carbon source
[Ref.: #32348]	esculin ChEBI	+	hydrolysis
[Ref.: #32348]	glucose ChEBI	+	carbon source
[Ref.: #32348]	malate ChEBI	+	carbon source
[Ref.: #32348]	maltose ChEBI	+	carbon source
[Ref.: #32348]	mannose ChEBI	+	carbon source
[Ref.: #32348]	nitrate ChEBI	+	reduction

	Metabolite production	Metabolite	Production
[Ref.: #32348]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #32348]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #32348]	catalase	+	1.11.1.6
[Ref.: #32348]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32348]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7334]	Sample type/isolated from	steel surface of a beer-bottling plant
[Ref.: #7334]	Country	Germany
[Ref.: #7334]	Country ISO 3 Code	DEU
[Ref.: #7334]	Continent	Europe

[Ref.: #59591]	Sample type/isolated from	Steel surface of a beer bottling plant
[Ref.: #59591]	Sampling date	2002-08-01
[Ref.: #59591]	Country	Germany
[Ref.: #59591]	Country ISO 3 Code	DEU
[Ref.: #59591]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Fermented
#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM232809 (>99% sequence identity) for Epilithonimonas from Microbeatlas

Aquatic Samples	79
Soil Samples	16
Animal Samples	136
Plant Samples	31
Total Samples	262

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7334]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7334]	Chryseobacterium pallidum partial 16S rRNA gene, type strain 26-3St2bT	AM232809	1468	ENA	373671 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Epilithonimonas pallida DSM 18015	2681813503	draft	JGI IMG/M	373671 tax ID	*

[Ref.: #32348]

GC-content

38.1 mol%

Availability in culture collections External links

[Ref.: #7334]

Culture collection no.

DSM 18015, CCUG 52548

[Ref.: #75182]

SI-ID 323957

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants.	Herzog P, Winkler I, Wolking D, Kampfer P, Lipski A	Int J Syst Evol Microbiol	10.1099/ijs.0.65362-0	2008	*

References

#7334

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18015

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32348

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28579 (see below)

#59591 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52548

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75182

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323957.1 )

#28579

IJSEM 26 2008 ( DOI 10.1099/ijs.0.65362-0 , PubMed 18175677 )

* These data were automatically processed and therefore are not curated

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