Name: Muricauda ruestringensis B1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5619

Type strain:

Species: Muricauda ruestringensis

Strain Designation: B1

Culture col. no.: DSM 13258, KCTC 12948, LMG 19739, CIP 107369, KCTC 62007

Strain history: CIP <- 2002, L. Berthe-Corti, Carl von Ossietzky Univ., Oldenburg, Germany: strain B1

NCBI tax ID(s): 886377 (strain), 111501 (species)

SI-ID 13469

LMG 19739, DSM 13258, KCTC 12928, KCTC 12948, CIP 107369

Section

Muricauda ruestringensis B1 is a facultative anaerobe, slightly halophilic, mesophilic bacterium that forms circular colonies and was isolated from seawater sediment suspension containing hexadecane.

colony-forming
Gram-negative
rod-shaped
facultative anaerobe
mesophilic
slightly halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	Muricauda
	Species	Muricauda ruestringensis
	Full Scientific Name (LPSN)	Muricauda ruestringensis Bruns et al. 2001

Synonym

Allomuricauda ruestringensis

Information on morphological and physiological properties Morphology

[Ref.: #43377]	Gram stain	negative
[Ref.: #122302]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #43377]	Cell length	1.1-2.7 µm

[Ref.: #43377]	Cell width	0.3-0.6 µm

[Ref.: #43377]	Cell shape	rod-shaped
[Ref.: #122302]	Cell shape	rod-shaped

[Ref.: #43377]	Motility	no
[Ref.: #122302]	Motility	no

[Ref.: #43377]	Colony size	0.5-1 mm
[Ref.: #43377]	Colony color	yellow
[Ref.: #43377]	Colony shape	circular
[Ref.: #43377]	Cultivation medium used	Nutrient Agar

[Ref.: #43377]	Pigment production	no
[Ref.: #43377]	Pigment name	Flexirubin-Type
[Ref.: #122302]	Pigment production	no
[Ref.: #122302]	Pigment name	Flexirubin

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4983]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #4983]

Culture medium growth

[Ref.: #4983]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4983]

Culture medium composition

expand / minimize

[Ref.: #4983]

Culture medium

MODIFIED SEA WATER AGAR (DSMZ Medium 917)

[Ref.: #4983]

Culture medium growth

[Ref.: #4983]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4983]

Culture medium composition

expand / minimize

[Ref.: #34934]

Culture medium

MEDIUM 168 - for Cytophaga latercula and Flammeovirga aprica

[Ref.: #34934]

Culture medium growth

[Ref.: #34934]

Culture medium composition

expand / minimize

[Ref.: #43377]

Culture medium

Nutrient agar (NA)

[Ref.: #43377]

Culture medium growth

[Ref.: #122302]

Culture medium

CIP Medium 168

[Ref.: #122302]

Culture medium growth

[Ref.: #122302]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4983]		growth	28 °C
[Ref.: #4983]		growth	30 °C
[Ref.: #34934]		growth	25 °C
[Ref.: #43377]		optimum	20-30 °C
[Ref.: #43377]		growth	8-40 °C
[Ref.: #122302]		growth	15-41 °C
[Ref.: #122302]	no	growth	5 °C
[Ref.: #122302]	no	growth	45 °C

[Ref.: #4983]	Temperature range	mesophilic
[Ref.: #34934]	Temperature range	mesophilic
[Ref.: #122302]	Temperature range	psychrophilic
[Ref.: #122302]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #43377]			optimum	6.5-7.5
[Ref.: #43377]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43377]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #43377]

Halophily / tolerance level

slightly halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #43377]	NaCl		growth	0.5-9.0	%(w/v)
[Ref.: #43377]	NaCl		optimum	3	%(w/v)
[Ref.: #122302]	NaCl	no	growth	0	%
[Ref.: #122302]	NaCl	no	growth	2	%
[Ref.: #122302]	NaCl	no	growth	4	%
[Ref.: #122302]	NaCl	no	growth	6	%
[Ref.: #122302]	NaCl	no	growth	8	%
[Ref.: #122302]	NaCl	no	growth	10	%

[Ref.: #43377]

Observation

formation of appendages as a continuum of the outer membrane

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43377]	acetate ChEBI	-	carbon source
[Ref.: #43377]	agar ChEBI	-	hydrolysis
[Ref.: #43377]	alanine ChEBI	+	carbon source
[Ref.: #43377]	arginine ChEBI	+	carbon source
[Ref.: #43377]	cellobiose ChEBI	+	carbon source
[Ref.: #43377]	cellulose ChEBI	-	hydrolysis
[Ref.: #122302]	esculin ChEBI	+	hydrolysis
[Ref.: #43377]	ethanol ChEBI	-	carbon source
[Ref.: #43377]	fructose ChEBI	+	carbon source
[Ref.: #43377]	gelatin ChEBI	-	hydrolysis
[Ref.: #43377]	glucose ChEBI	-	carbon source
[Ref.: #43377]	hexadecane ChEBI	-	carbon source
[Ref.: #122302]	hippurate ChEBI	+	hydrolysis
[Ref.: #43377]	lactose ChEBI	+	carbon source
[Ref.: #122302]	malonate ChEBI	-	assimilation
[Ref.: #43377]	mannitol ChEBI	-	carbon source
[Ref.: #43377]	mannose ChEBI	+	carbon source
[Ref.: #43377]	nitrate ChEBI	-	reduction
[Ref.: #122302]	nitrate ChEBI	-	reduction
[Ref.: #122302]	nitrite ChEBI	-	reduction
[Ref.: #43377]	peptone	+	growth
[Ref.: #43377]	pyruvate ChEBI	-	carbon source
[Ref.: #43377]	raffinose ChEBI	+	carbon source
[Ref.: #43377]	serine ChEBI	-	carbon source
[Ref.: #43377]	starch ChEBI	-	hydrolysis
[Ref.: #43377]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122302]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #43377]	hydrogen sulfide ChEBI	no
[Ref.: #43377]	indole ChEBI	no
[Ref.: #122302]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122302]		acetoin ChEBI	-
[Ref.: #122302]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122302]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122302]	amylase	-
[Ref.: #122302]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122302]	caseinase	-	3.4.21.50
[Ref.: #43377]	catalase	-	1.11.1.6
[Ref.: #122302]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122302]	DNase	+
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122302]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122302]	gelatinase	-
[Ref.: #122302]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122302]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122302]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122302]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122302]	oxidase	-
[Ref.: #122302]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122302]	tryptophan deaminase	-
[Ref.: #122302]	tween esterase	+
[Ref.: #122302]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122302]	2181	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122302]	10303	-	+	-	+	-	+	+	-	-	-	+	+	-	-	-	+	+	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	degradation of pentoses	50	14 of 28
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	oxidative phosphorylation	41.76	38 of 91
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	degradation of sugar acids	36	9 of 25
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4983]	Sample type/isolated from	seawater sediment suspension containing hexadecane
[Ref.: #4983]	Geographic location (country and/or sea, region)	Jadebusen Bay
[Ref.: #4983]	Country	Germany
[Ref.: #4983]	Country ISO 3 Code	DEU
[Ref.: #4983]	Continent	Europe

[Ref.: #43377]	Sample type/isolated from	continuous flow culture with sediment
[Ref.: #43377]	Geographic location (country and/or sea, region)	Jadebusen bay
[Ref.: #43377]	Country	Germany
[Ref.: #43377]	Country ISO 3 Code	DEU
[Ref.: #43377]	Continent	Europe

[Ref.: #122302]	Sample type/isolated from	Environment, Suspension of intertidal sediment
[Ref.: #122302]	Country	Germany
[Ref.: #122302]	Country ISO 3 Code	DEU
[Ref.: #122302]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF218782 (>99% sequence identity) for Muricauda ruestringensis from Microbeatlas

Aquatic Samples	313
Soil Samples	24
Animal Samples	11
Plant Samples	3
Total Samples	351

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4983]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122302]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4983]	Muricauda ruestringensis 16S ribosomal RNA gene, partial sequence	AF218782	1426	ENA	886377 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allomuricauda ruestringensis DSM 13258	GCA_000224085	complete	GenBank	886377 tax ID	*
[Ref.: #66792]	Muricauda ruestringensis DSM 13258	886377.3	complete	PATRIC	886377 tax ID	*
[Ref.: #66792]	Muricauda ruestringensis B1, DSM 13258	2505679007	complete	JGI IMG/M	886377 tax ID	*

[Ref.: #4983]

GC-content

41.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Muricauda ruestringensis DSM 13258 DSM 13258 NCBI: GCA_000224085.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Muricauda ruestringensis DSM 13258 DSM 13258 NCBI: GCA_000224085.1
[Ref.: #69480]	motile	no	91.499	yes
[Ref.: #69480]	flagellated	no	96.997	no
[Ref.: #69480]	gram-positive	no	98.109	yes
[Ref.: #69480]	anaerobic	no	99.289	yes
[Ref.: #69480]	aerobic	yes	79.795	yes
[Ref.: #69480]	halophile	no	71.424	no
[Ref.: #69480]	spore-forming	no	97.32	no
[Ref.: #69480]	thermophile	no	98.146	yes
[Ref.: #69480]	glucose-util	yes	84.013	yes
[Ref.: #69480]	glucose-ferment	no	84.261	no

Availability in culture collections External links

[Ref.: #4983]

Culture collection no.

DSM 13258, KCTC 12948, LMG 19739, CIP 107369, KCTC 62007

[Ref.: #75102]

SI-ID 13469

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda aurea sp. nov. and Muricauda profundi sp. nov., two marine bacteria isolated from deep sea sediment of Pacific Ocean.	Zhao S, Liu R, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005217	2022	*
Phylogeny	Muricauda maritima sp. nov., Muricauda aequoris sp. nov. and Muricauda oceanensis sp. nov., three marine bacteria isolated from seawater.	Guo LL, Wu D, Sun C, Cheng H, Xu XW, Wu M, Wu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004522	2020	*
Phylogeny	Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.	Liu L, Yu M, Zhou S, Fu T, Sun W, Wang L, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003953	2020	*
Phylogeny	Muricauda antarctica sp. nov., a marine member of the Flavobacteriaceae isolated from Antarctic seawater.	Wu YH, Yu PS, Zhou YD, Xu L, Wang CS, Wu M, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.048355-0	2013	*
Phylogeny	Muricauda taeanensis sp. nov., isolated from a marine tidal flat.	Kim JM, Jin HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.047647-0	2013	*
Phylogeny	Muricauda flavescens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt lake near Hwajinpo Beach of the East Sea in Korea, and emended description of the genus Muricauda.	Yoon JH, Lee MH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.03051-0	2005	*
Phylogeny	Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment.	Bruns A, Rohde M, Berthe-Corti L	Int J Syst Evol Microbiol	10.1099/00207713-51-6-1997	2001	*

References

#4983

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13258

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34934 ; Curators of the CIP;

#43377

Alke Bruns, Manfred Rohde and Luise Berthe-Corti: Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. IJSEM 51: 1997 - 2006 2001 ( DOI 10.1099/00207713-51-6-1997 , PubMed 11760940 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75102

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13469.1 )

#122302 Collection of Institut Pasteur ; Curators of the CIP; CIP 107369
* These data were automatically processed and therefore are not curated

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Muricauda ruestringensis DSM 13258 DSM 13258

Muricauda ruestringensis DSM 13258 DSM 13258

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