"Candidatus Bartonella mastomysi" (DSM 2802, ATCC 29979, NCTC 11179)

BacDive ID 5620

Type strain

Strain Designation CL41/66, CL 41/66

Culture col. no. DSM 2802 ATCC 29979 NCTC 11179 CL41/66 JCM 7459 4 more

NCBI tax ID(s) 1820002

Special Collections DSMZ JCM CIP

History <- NCTC <- J.G. Wallace, CL41/66 H. Oyaizu KS 0431 <-- NCTC 11179 <-- J. G. Wallace CL41/66. CIP <- 1997, J.F. Bernardet, INRA, Jouy-en-Josas, France <- LMG <- NCTC <- J.G. Wallace: strain CL 41/66

"Candidatus Bartonella mastomysi" CL41/66 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from urine.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence

Name and taxonomic classification

Culture Collection Numbers

DSM 2802 ATCC 29979 NCTC 11179 CL41/66 JCM 7459 CCM 3297 LMG 4028 CIP 105169 CL 41/66

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Bartonellaceae

Genus Bartonella

Species "Candidatus Bartonella mastomysi"

Full scientific name Candidatus Bartonella mastomysi corrig. Mediannikov et al. 2014

Synonyms (2)

"Candidatus Bartonella mastomydis"
"Bartonella mastomydis"

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121393	negative	rod-shaped
125438			90.5
125438	negative		98.478

Colony morphology

121393

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1134	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39212	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
121393	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1134	positive	growth	30	mesophilic
39212	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
121393	positive	growth	5-37
121393	negative	growth	41
121393	negative	growth	45

Physiology and metabolism

Oxygen tolerance

121393

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.303

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121393	NaCl	positive	growth	0-6 %
121393	NaCl		growth	8 %
121393	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121393	16947 ChEBI	citrate	-	carbon source
121393	17234 ChEBI	glucose	-	degradation
121393	606565 ChEBI	hippurate	-	hydrolysis
121393	15792 ChEBI	malonate	-	assimilation
121393	17632 ChEBI	nitrate	-	builds gas from
121393	17632 ChEBI	nitrate	-	reduction
121393	16301 ChEBI	nitrite	-	builds gas from
121393	16301 ChEBI	nitrite	+	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121393	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121393	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
121393	15688 ChEBI	acetoin	-
121393	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121393	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121393	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
121393	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121393	caseinase	+	3.4.21.50
121393	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121393	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121393	gamma-glutamyltransferase	-	2.3.2.2
121393	gelatinase	+/-
121393	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121393	lipase	-
68382	lipase (C 14)	-		from API zym
121393	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121393	ornithine decarboxylase	-	4.1.1.17
121393	oxidase	+
121393	phenylalanine ammonia-lyase	-	4.3.1.24
121393	protease	+
68382	trypsin	-	3.4.21.4	from API zym
121393	tryptophan deaminase	-
121393	tween esterase	-
121393	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121393	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
1134	urine
67770	Urine
121393	Urine	Northallerton	United Kingdom	GBR	Europe	1966

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1134	2	Risk group (German classification) According to TRBA 466
121393	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1672700v1 assembly for Myroides odoratus FDAARGOS_1132	complete	GCA_016727005	256.11		256	96.99
67770	57428_F01 assembly for Myroides odoratus NCTC11179	contig	GCA_900453725	256.7	2811995254	256	78.3

GC content

@ref	GC-content (mol%)	Method
1134	34.4
67770	34.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Myroides odoratus NCTC11179
NCBI: GCA_900453725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	53.50	no
125439	motility	BacteriaNetⓘ	yes	53.60	no
125439	gram_stain	BacteriaNetⓘ	positive	66.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Myroides odoratus strain FDAARGOS_1132 strain Not applicable
PATRIC: 256.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.48	no
125438	anaerobic	anaerobicⓘ	no	95.86	no
125438	spore-forming	spore-formingⓘ	no	90.30	no
125438	aerobic	aerobicⓘ	yes	85.60	yes
125438	thermophilic	thermophileⓘ	no	98.40	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

References

#1134	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2802
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39212	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#121393	Collection of Institut Pasteur ; Curators of the CIP; CIP 105169
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

Rate our new design

Content

About us