Name: Flavobacterium macrobrachii an-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5581

Type strain:

Species: Flavobacterium macrobrachii

Strain Designation: an-8

Culture col. no.: DSM 22219, BCRC 17965, LMG 25203

Strain history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen

NCBI tax ID(s): 591204 (species)

SI-ID 360700

LMG 25203, BCRC 17965, DSM 22219

Section

Flavobacterium macrobrachii an-8 is a mesophilic bacterium that was isolated from freshwater pond for culturing giant river shrimp .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium macrobrachii**
	Full Scientific Name (LPSN)	Flavobacterium macrobrachii Sheu et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #69480]	Motility	no Confidence in %92.241

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16209]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16209]

Culture medium growth

[Ref.: #16209]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16209]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16209]			growth	25 °C

[Ref.: #16209]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16209]	Sample type/isolated from	freshwater pond for culturing giant river shrimp (Macrobrachium rosenbergii)
[Ref.: #16209]	Host species	Macrobrachium rosenbergii
[Ref.: #16209]	Geographic location (country and/or sea, region)	Pingtung countryside (22° 35' 27.0'' N 120° 36' 42.5'' E)
[Ref.: #16209]	Country	Taiwan
[Ref.: #16209]	Country ISO 3 Code	TWN
[Ref.: #16209]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Pond (small)
#Host	#Arthropoda	#Crustacea

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ593904 (>99% sequence identity) for Flavobacterium macrobrachii subclade from Microbeatlas

Aquatic Samples	1469
Soil Samples	802
Animal Samples	217
Plant Samples	219
Total Samples	2707

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16209]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16209]	Flavobacterium macrobrachii strain an-8 16S ribosomal RNA gene, partial sequence	FJ593904	1405	ENA	591204 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium macrobrachii an-8	GCA_014486675	contig	GenBank	591204 tax ID	*
[Ref.: #66792]	Flavobacterium macrobrachii LMG 25203	GCA_014385475	contig	GenBank	591204 tax ID	*
[Ref.: #66792]	Flavobacterium macrobrachii strain LMG 25203 strain not collected	591204.3	wgs	PATRIC	591204 tax ID	*

[Ref.: #16209]

GC-content

39.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium macrobrachii strain LMG 25203 strain not collected PATRIC: 591204.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium macrobrachii strain LMG 25203 strain not collected PATRIC: 591204.3
[Ref.: #69480]	gram-positive	no	98.61	no
[Ref.: #69480]	anaerobic	no	98.769	no
[Ref.: #69480]	halophile	no	97.396	no
[Ref.: #69480]	spore-forming	no	95.541	no
[Ref.: #69480]	glucose-util	yes	81.861	no
[Ref.: #69480]	flagellated	no	95.302	no
[Ref.: #69480]	aerobic	yes	83.905	no
[Ref.: #69480]	thermophile	no	98.657	yes
[Ref.: #69480]	motile	no	90.93	no
[Ref.: #69480]	glucose-ferment	no	90.589	no

Availability in culture collections External links

[Ref.: #16209]

Culture collection no.

DSM 22219, BCRC 17965, LMG 25203

[Ref.: #75063]

SI-ID 360700

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium solisilvae sp. nov. and Flavobacterium silvaticum sp. nov., isolated from forest soil.	Jung HS, Chun BH, Kim HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004867	2021	*
Phylogeny	Flavobacterium phycosphaerae sp. nov. isolated from the phycosphere of Microcystis aeruginosa.	Kim M, Lee BH, Lee KE, Park W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004735	2021	*
Phylogeny	Flavobacterium lutivivi sp. nov., isolated from activated sludge.	Feng Q, Han L, Nogi Y, Hong Q, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000892	2016	*
Phylogeny	Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of Flavobacterium cheonanense, F. chungnamense, F. koreense and F. aquatile.	Lee S, Weon HY, Han K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijs.0.032698-0	2011	*
Phylogeny	Flavobacterium macrobrachii sp. nov., isolated from a freshwater shrimp culture pond.	Sheu SY, Chiu TF, Young CC, Arun AB, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.025403-0	2010	*

References

#16209

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22219

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75063

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360700.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavobacterium macrobrachii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Flavobacterium macrobrachii strain LMG 25203 strain not collected

Flavobacterium macrobrachii strain LMG 25203 strain not collected

Change proposal

Change proposal