Name: Flavobacterium macrobrachii an-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5581

Type strain:

Species: Flavobacterium macrobrachii

Strain Designation: an-8

Culture col. no.: DSM 22219, BCRC 17965, LMG 25203

Strain history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen

NCBI tax ID(s): 591204 (species)

SI-ID 360700

LMG 25203, BCRC 17965, DSM 22219

Special Collections

DSMZ

Section

Flavobacterium macrobrachii an-8 is a bacterium that was isolated from freshwater pond for culturing giant river shrimp .

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium macrobrachii**
	Full Scientific Name (LPSN)	Flavobacterium macrobrachii Sheu et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.75

[Ref.: #69480]	Motility	no Confidence in %95.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16209]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16209]

Culture medium growth

[Ref.: #16209]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16209]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16209]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %95.827
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16209]	Sample type/isolated from	freshwater pond for culturing giant river shrimp (Macrobrachium rosenbergii)
[Ref.: #16209]	Host species	Macrobrachium rosenbergii
[Ref.: #16209]	Geographic location (country and/or sea, region)	Pingtung countryside (22° 35' 27.0'' N 120° 36' 42.5'' E)
[Ref.: #16209]	Country	Taiwan, Province of China
[Ref.: #16209]	Country ISO 3 Code	TWN
[Ref.: #16209]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Pond (small)
#Host	#Arthropoda	#Crustacea

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ593904 (>99% sequence identity) for Flavobacterium macrobrachii subclade from Microbeatlas

Aquatic Samples	1469
Soil Samples	802
Animal Samples	217
Plant Samples	219
Total Samples	2707

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16209]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16209]	Flavobacterium macrobrachii strain an-8 16S ribosomal RNA gene, partial sequence	FJ593904	1405	GenBank ENA	591204 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium macrobrachii an-8	GCA_014486675	contig	GenBank ENA	591204 tax ID	*
[Ref.: #66792]	Flavobacterium macrobrachii LMG 25203	GCA_014385475	contig	GenBank ENA	591204 tax ID	*
[Ref.: #66792]	Flavobacterium macrobrachii strain LMG 25203 strain not collected	591204.3	wgs	PATRIC	591204 tax ID	*

[Ref.: #16209]

GC-content

39.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium macrobrachii strain LMG 25203 strain not collected PATRIC: 591204.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium macrobrachii strain LMG 25203 strain not collected PATRIC: 591204.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.75	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.598	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	95.827	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.274	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.851	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95.5	no

Availability in culture collections External links

[Ref.: #16209]

Culture collection no.

DSM 22219, BCRC 17965, LMG 25203

[Ref.: #75063]

SI-ID 360700

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium solisilvae sp. nov. and Flavobacterium silvaticum sp. nov., isolated from forest soil.	Jung HS, Chun BH, Kim HM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004867	2021	*
Phylogeny	Flavobacterium phycosphaerae sp. nov. isolated from the phycosphere of Microcystis aeruginosa.	Kim M, Lee BH, Lee KE, Park W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004735	2021	*
Phylogeny	Flavobacterium lutivivi sp. nov., isolated from activated sludge.	Feng Q, Han L, Nogi Y, Hong Q, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000892	2016	*
Phylogeny	Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of Flavobacterium cheonanense, F. chungnamense, F. koreense and F. aquatile.	Lee S, Weon HY, Han K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijs.0.032698-0	2011	*
Phylogeny	Flavobacterium macrobrachii sp. nov., isolated from a freshwater shrimp culture pond.	Sheu SY, Chiu TF, Young CC, Arun AB, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.025403-0	2010	*

References

#16209

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22219

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75063

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360700.1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium macrobrachii strain LMG 25203 strain not collected

Flavobacterium macrobrachii strain LMG 25203 strain not collected

Change proposal

Change proposal