Strain identifier
BacDive ID: 5581
Type strain: 
Species: Flavobacterium macrobrachii
Strain Designation: an-8
Strain history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen
NCBI tax ID(s): 591204 (species)
version 9.1 (current version)
General
@ref: 16209
BacDive-ID: 5581
DSM-Number: 22219
keywords: genome sequence, 16S sequence, Bacteria
description: Flavobacterium macrobrachii an-8 is a bacterium that was isolated from freshwater pond for culturing giant river shrimp .
NCBI tax id
- NCBI tax id: 591204
- Matching level: species
strain history
- @ref: 16209
- history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan <- W.-M. Chen
doi: 10.13145/bacdive5581.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium macrobrachii
- full scientific name: Flavobacterium macrobrachii Sheu et al. 2011
@ref: 16209
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium macrobrachii
full scientific name: Flavobacterium macrobrachii Sheu et al. 2011
strain designation: an-8
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 96.75 | |
| 69480 | 95.5 | no |
Culture and growth conditions
culture medium
- @ref: 16209
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 16209
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 95.827 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 16209
- sample type: freshwater pond for culturing giant river shrimp (Macrobrachium rosenbergii)
- host species: Macrobrachium rosenbergii
- geographic location: Pingtung countryside (22° 35' 27.0'' N 120° 36' 42.5'' E)
- country: Taiwan, Province of China
- origin.country: TWN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Aquaculture |
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Pond (small) |
| #Host | #Arthropoda | #Crustacea |
taxonmaps
- @ref: 69479
- File name: preview.99_13953.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_7189;97_8623;98_10575;99_13953&stattab=map
- Last taxonomy: Flavobacterium macrobrachii subclade
- 16S sequence: FJ593904
- Sequence Identity:
- Total samples: 2707
- soil counts: 802
- aquatic counts: 1469
- animal counts: 217
- plant counts: 219
Safety information
risk assessment
- @ref: 16209
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16209
- description: Flavobacterium macrobrachii strain an-8 16S ribosomal RNA gene, partial sequence
- accession: FJ593904
- length: 1405
- database: nuccore
- NCBI tax ID: 591204
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium macrobrachii an-8 | GCA_014486675 | contig | ncbi | 591204 |
| 66792 | Flavobacterium macrobrachii LMG 25203 | GCA_014385475 | contig | ncbi | 591204 |
| 66792 | Flavobacterium macrobrachii strain LMG 25203 strain not collected | 591204.3 | wgs | patric | 591204 |
GC content
- @ref: 16209
- GC-content: 39.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.75 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.598 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 95.827 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.274 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.851 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 95.5 | no |
External links
@ref: 16209
culture collection no.: DSM 22219, BCRC 17965, LMG 25203
straininfo link
- @ref: 75063
- straininfo: 360700
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20601490 | Flavobacterium macrobrachii sp. nov., isolated from a freshwater shrimp culture pond. | Sheu SY, Chiu TF, Young CC, Arun AB, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.025403-0 | 2010 | Aerobiosis, Animals, Aquaculture, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/*isolation & purification/physiology, Fresh Water, Hydrogen-Ion Concentration, Molecular Sequence Data, Palaemonidae/*microbiology, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan, Temperature | Genetics |
| Phylogeny | 22140162 | Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir, and emended descriptions of Flavobacterium cheonanense, F. chungnamense, F. koreense and F. aquatile. | Lee S, Weon HY, Han K, Ahn TY | Int J Syst Evol Microbiol | 10.1099/ijs.0.032698-0 | 2011 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Flavobacterium/*classification/genetics/isolation & purification, Fresh Water/*microbiology, Korea, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 26769164 | Flavobacterium lutivivi sp. nov., isolated from activated sludge. | Feng Q, Han L, Nogi Y, Hong Q, Lv J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000892 | 2016 | ||
| Phylogeny | 33709898 | Flavobacterium phycosphaerae sp. nov. isolated from the phycosphere of Microcystis aeruginosa. | Kim M, Lee BH, Lee KE, Park W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004735 | 2021 | ||
| Phylogeny | 34255622 | Flavobacterium solisilvae sp. nov. and Flavobacterium silvaticum sp. nov., isolated from forest soil. | Jung HS, Chun BH, Kim HM, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004867 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/isolation & purification, *Forests, Phosphatidylethanolamines, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16209 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22219) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22219 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 75063 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID360700.1 | StrainInfo: A central database for resolving microbial strain identifiers |