Name: Flavobacterium reichenbachii WB3.2-61
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5577

Type strain:

Species: Flavobacterium reichenbachii

Strain Designation: WB3.2-61

Culture col. no.: DSM 21791, CIP 109866, WB 3.2-61

Strain history: CIP <- 2008, DSMZ <- Dr. Tindall, Germany: strain WB3.2-61

NCBI tax ID(s): 362418 (species)

SI-ID 363446

DSM 21791, CIP 109866, LMG 25512

Special Collections

Section

Flavobacterium reichenbachii WB3.2-61 is an aerobe, Gram-negative, motile bacterium that was isolated from water of a hardwater creek.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium reichenbachii**
	Full Scientific Name (LPSN)	Flavobacterium reichenbachii Ali et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29215]	Gram stain	negative
[Ref.: #122150]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.227

[Ref.: #29215]	Cell length	6.75 µm

[Ref.: #29215]	Cell width	1 µm

[Ref.: #29215]	Cell shape	rod-shaped
[Ref.: #122150]	Cell shape	rod-shaped

[Ref.: #29215]	Motility	yes
[Ref.: #122150]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #29215]	Flagellum arrangement	gliding

[Ref.: #29215]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15954]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15954]

Culture medium growth

[Ref.: #15954]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15954]

Culture medium composition

expand / minimize

[Ref.: #36126]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #36126]

Culture medium growth

[Ref.: #36126]

Culture medium composition

expand / minimize

[Ref.: #122150]

Culture medium

CIP Medium 566

[Ref.: #122150]

Culture medium growth

[Ref.: #122150]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15954]	growth	24 °C
[Ref.: #29215]	growth	06-30 °C
[Ref.: #29215]	optimum	20-26 °C
[Ref.: #36126]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #29215]			optimum	6.2
[Ref.: #29215]			growth	5.8-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29215]	Oxygen tolerance	aerobe
[Ref.: #122150]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29215]		NaCl		growth	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29215]	arabinose ChEBI	+	carbon source
[Ref.: #29215]	asparagine ChEBI	+	carbon source
[Ref.: #29215]	aspartate ChEBI	+	carbon source
[Ref.: #29215]	cellobiose ChEBI	+	carbon source
[Ref.: #29215]	esculin ChEBI	+	hydrolysis
[Ref.: #29215]	fructose ChEBI	+	carbon source
[Ref.: #29215]	fucose ChEBI	+	carbon source
[Ref.: #29215]	galacturonate ChEBI	+	carbon source
[Ref.: #29215]	glucose ChEBI	+	carbon source
[Ref.: #29215]	lactose ChEBI	+	carbon source
[Ref.: #29215]	maltose ChEBI	+	carbon source
[Ref.: #29215]	mannose ChEBI	+	carbon source
[Ref.: #29215]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29215]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #122150]	nitrate ChEBI	-	reduction
[Ref.: #122150]	nitrite ChEBI	-	reduction
[Ref.: #29215]	ornithine ChEBI	+	carbon source
[Ref.: #29215]	proline ChEBI	+	carbon source
[Ref.: #29215]	threonine ChEBI	+	carbon source
[Ref.: #29215]	tween 40 ChEBI	+	carbon source
[Ref.: #29215]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #122150]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #29215]	catalase	+	1.11.1.6
[Ref.: #122150]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #29215]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #29215]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122150]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122150]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122150]	12173	-	+	+	+	-	+	+	+	-	-	+	+	-	+	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15954]	Sample type/isolated from	water of a hardwater creek
[Ref.: #15954]	Geographic location (country and/or sea, region)	Harz Mountains, Westerhöfer Bach, Westerhof, 40 km north of Göttingen
[Ref.: #15954]	Country	Germany
[Ref.: #15954]	Country ISO 3 Code	DEU
[Ref.: #15954]	Continent	Europe

[Ref.: #122150]	Sample type/isolated from	Environment, Hard water, river
[Ref.: #122150]	Geographic location (country and/or sea, region)	Westerhöfer Bach, Harz mountains
[Ref.: #122150]	Country	Germany
[Ref.: #122150]	Country ISO 3 Code	DEU
[Ref.: #122150]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15954]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122150]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15954]	Flavobacterium reichenbachii partial 16S rRNA gene, type strain WB 3.2-61T	AM177616	1501	GenBank ENA	362418 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium reichenbachii DSM 21791	GCA_002217435	scaffold	GenBank ENA	362418 tax ID	*
[Ref.: #66792]	Flavobacterium reichenbachii strain DSM 21791	362418.11	wgs	PATRIC	362418 tax ID	*

[Ref.: #15954]	GC-content	34.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29215]	GC-content	34.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium reichenbachii DSM 21791 NCBI: GCA_002217435.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium reichenbachii DSM 21791 NCBI: GCA_002217435.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.227	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.157	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.015	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.122	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.424	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	yes

Availability in culture collections External links

[Ref.: #15954]

Culture collection no.

DSM 21791, CIP 109866, WB 3.2-61

[Ref.: #75059]

SI-ID 363446

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium fluviatile sp. nov., isolated from a freshwater creek.	Chen WM, Su CL, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002659	2018	*
Phylogeny	Flavobacterium palustre sp. nov., isolated from wetland soil.	Feng H, Zeng Y, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.000054	2015	*
Phylogeny	Flavobacterium banpakuense sp. nov., isolated from leaf-and-branch compost.	Kim JJ, Jin HM, Lee HJ, Jeon CO, Kanaya E, Koga Y, Takano K, Kanaya S	Int J Syst Evol Microbiol	10.1099/ijs.0.022467-0	2010	*
Phylogeny	Flavobacterium rivuli sp. nov., Flavobacterium subsaxonicum sp. nov., Flavobacterium swingsii sp. nov. and Flavobacterium reichenbachii sp. nov., isolated from a hard water rivulet.	Ali Z, Cousin S, Fruhling A, Brambilla E, Schumann P, Yang Y, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.008771-0	2009	*

References

#15954

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21791

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29215

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25636 (see below)

#36126 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75059

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363446.1 )

#122150 Collection of Institut Pasteur ; Curators of the CIP; CIP 109866

#25636

IJSEM 2610 2009 ( DOI 10.1099/ijs.0.008771-0 , PubMed 19622646 )

* These data were automatically processed and therefore are not curated

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Flavobacterium reichenbachii DSM 21791

Flavobacterium reichenbachii DSM 21791

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