Name: Flavobacterium swingsii WB2.3-68
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5578

Type strain:

Species: Flavobacterium swingsii

Strain Designation: WB2.3-68

Culture col. no.: DSM 21789, CIP 109868, WB 2.3-68

Strain history: CIP <- 2008, DSMZ <- Dr. Tindall, Germany: strain WB2.3-68

NCBI tax ID(s): 1121900 (strain), 498292 (species)

SI-ID 363445

DSM 21789, CIP 109868, LMG 25510

Section

Flavobacterium swingsii WB2.3-68 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from water of a hardwater creek.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium swingsii**
	Full Scientific Name (LPSN)	Flavobacterium swingsii Ali et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29215]	Gram stain	negative
[Ref.: #123396]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #29215]	Cell length	5.25 µm

[Ref.: #29215]	Cell width	0.3 µm

[Ref.: #29215]	Cell shape	rod-shaped
[Ref.: #123396]	Cell shape	rod-shaped

[Ref.: #29215]	Motility	no
[Ref.: #123396]	Motility	no

[Ref.: #29215]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15952]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #15952]

Culture medium growth

[Ref.: #15952]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15952]

Culture medium composition

expand / minimize

[Ref.: #15952]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15952]

Culture medium growth

[Ref.: #15952]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15952]

Culture medium composition

expand / minimize

[Ref.: #34226]

Culture medium

MEDIUM 34 - for Flavobacterium branchiophilum and Flavobacterium columnare

[Ref.: #34226]

Culture medium growth

[Ref.: #34226]

Culture medium composition

expand / minimize

[Ref.: #123396]

Culture medium

CIP Medium 566

[Ref.: #123396]

Culture medium growth

[Ref.: #123396]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15952]	growth	24 °C
[Ref.: #29215]	growth	03-26 °C
[Ref.: #29215]	optimum	24-26 °C
[Ref.: #34226]	growth	25 °C

[Ref.: #15952]	Temperature range	psychrophilic
[Ref.: #34226]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29215]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29215]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29215]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29215]	nitrate ChEBI	+	reduction
[Ref.: #123396]	nitrate ChEBI	+	reduction
[Ref.: #123396]	nitrite ChEBI	-	reduction
[Ref.: #29215]	tween 40 ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29215]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29215]	catalase	+	1.11.1.6
[Ref.: #123396]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29215]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123396]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123396]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123396]	12175	-	+	-	+	-	+	+	-	-	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15952]	Sample type/isolated from	water of a hardwater creek
[Ref.: #15952]	Geographic location (country and/or sea, region)	Harz Mountains, Westerhöfer Bach, Westerhof, 40 km north of Göttingen
[Ref.: #15952]	Country	Germany
[Ref.: #15952]	Country ISO 3 Code	DEU
[Ref.: #15952]	Continent	Europe

[Ref.: #123396]	Sample type/isolated from	Environment, Hard water, river
[Ref.: #123396]	Geographic location (country and/or sea, region)	Westerhöfer Bach, Harz mountains
[Ref.: #123396]	Country	Germany
[Ref.: #123396]	Country ISO 3 Code	DEU
[Ref.: #123396]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15952]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123396]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15952]	Flavobacterium swingsii partial 16S rRNA gene, type strain WB2.3-68T	AM934651	1484	ENA	498292 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium swingsii DSM 21789	GCA_900111965	contig	GenBank	498292 tax ID	*
[Ref.: #66792]	Flavobacterium swingsii strain DSM 21789	498292.3	wgs	PATRIC	498292 tax ID	*
[Ref.: #66792]	Flavobacterium swingsii DSM 21789	2599185297	draft	JGI IMG/M	498292 tax ID	*

[Ref.: #15952]	GC-content	33.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29215]	GC-content	33.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium swingsii strain DSM 21789 PATRIC: 498292.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium swingsii strain DSM 21789 PATRIC: 498292.3
[Ref.: #69480]	gram-positive	no	99.124	yes
[Ref.: #69480]	anaerobic	no	98.749	yes
[Ref.: #69480]	halophile	no	93.909	no
[Ref.: #69480]	spore-forming	no	95.433	no
[Ref.: #69480]	glucose-util	yes	73.502	no
[Ref.: #69480]	aerobic	yes	89.015	yes
[Ref.: #69480]	thermophile	no	98.617	yes
[Ref.: #69480]	motile	no	92.481	yes
[Ref.: #69480]	flagellated	no	97.416	yes
[Ref.: #69480]	glucose-ferment	no	92.896	no

Availability in culture collections External links

[Ref.: #15952]

Culture collection no.

DSM 21789, CIP 109868, WB 2.3-68

[Ref.: #75060]

SI-ID 363445

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium rivuli sp. nov., Flavobacterium subsaxonicum sp. nov., Flavobacterium swingsii sp. nov. and Flavobacterium reichenbachii sp. nov., isolated from a hard water rivulet.	Ali Z, Cousin S, Fruhling A, Brambilla E, Schumann P, Yang Y, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.008771-0	2009	*

References

#15952

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21789

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29215

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25636 (see below)

#34226 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75060

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363445.1 )

#123396 Collection of Institut Pasteur ; Curators of the CIP; CIP 109868

#25636

IJSEM 2610 2009 ( DOI 10.1099/ijs.0.008771-0 , PubMed 19622646 )

* These data were automatically processed and therefore are not curated

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Flavobacterium swingsii strain DSM 21789

Flavobacterium swingsii strain DSM 21789

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