Name: Flavobacterium saliperosum S13
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5558

Type strain:

Species: Flavobacterium saliperosum

Strain Designation: S13

Culture col. no.: DSM 21664, CGMCC 1.3801, JCM 13331, CCUG 60843, CIP 109164

Strain history: CIP <- 2006, JCM <- 2005, S.J. Liu, Chinese Academy Sciences, Beijing, China: strain S13

NCBI tax ID(s): 329186 (species)

SI-ID 286038

AS 1.3801, CGMCC 1.3801, JCM 13331, CIP 109164, LMG 28396, DSM 21664, CCUG 60843

Special Collections

Section

Flavobacterium saliperosum S13 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater lake sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium saliperosum**
	Full Scientific Name (LPSN)	Flavobacterium saliperosum Wang et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31692]	Gram stain	negative
[Ref.: #122386]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.25

[Ref.: #31692]	Cell length	1.5-2.5 µm

[Ref.: #31692]	Cell width	0.35-0.55 µm

[Ref.: #31692]	Cell shape	rod-shaped
[Ref.: #122386]	Cell shape	rod-shaped

[Ref.: #31692]	Motility	no
[Ref.: #122386]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.5

[Ref.: #62462]

Incubation period

2 days

[Ref.: #31692]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15874]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15874]

Culture medium growth

[Ref.: #15874]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15874]

Culture medium composition

expand / minimize

[Ref.: #33996]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #33996]

Culture medium growth

[Ref.: #33996]

Culture medium composition

expand / minimize

[Ref.: #122386]

Culture medium

CIP Medium 328

[Ref.: #122386]

Culture medium growth

[Ref.: #122386]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122386]

Culture medium

CIP Medium 368

[Ref.: #122386]

Culture medium growth

[Ref.: #122386]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122386]

Culture medium

CIP Medium 566

[Ref.: #122386]

Culture medium growth

[Ref.: #122386]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15874]	growth	25 °C
[Ref.: #31692]	growth	20-34 °C
[Ref.: #31692]	optimum	28 °C
[Ref.: #33996]	growth	30 °C
[Ref.: #62462]	growth	30 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #31692]			optimum	7.5
[Ref.: #31692]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31692]	Oxygen tolerance	aerobe
[Ref.: #62462]	Oxygen tolerance	aerobe

[Ref.: #31692]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %93.303
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31692]		NaCl		growth	0-1	%
[Ref.: #31692]		NaCl		optimum	0-1	%

[Ref.: #31692]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122386]		nitrate ChEBI	-	reduction
[Ref.: #122386]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122386]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122386]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31692]	catalase	+	1.11.1.6
[Ref.: #122386]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #31692]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122386]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122386]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122386]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122386]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122386]	11691	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15874]	Sample type/isolated from	freshwater lake sediment
[Ref.: #15874]	Geographic location (country and/or sea, region)	Taihu Lake (also known as Lake Tai; 120° 02' 16.8'' E, 31° 27' 10.7'' N), Jiangsu Province
[Ref.: #15874]	Country	China
[Ref.: #15874]	Country ISO 3 Code	CHN
[Ref.: #15874]	Continent	Asia
[Ref.: #15874]	Geographic location	31.4530°/120.0380°

[Ref.: #62462]	Sample type/isolated from	Fresh water sediment
[Ref.: #62462]	Sampling date	2005
[Ref.: #62462]	Geographic location (country and/or sea, region)	Jiangsu Province,Taihu Lake
[Ref.: #62462]	Country	China
[Ref.: #62462]	Country ISO 3 Code	CHN
[Ref.: #62462]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Freshwater sediment of Taihu Lake in central China

[Ref.: #122386]	Sample type/isolated from	Environment, Fresh water, sediment
[Ref.: #122386]	Geographic location (country and/or sea, region)	Taihu lake, Jiangsu
[Ref.: #122386]	Country	China
[Ref.: #122386]	Country ISO 3 Code	CHN
[Ref.: #122386]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ021903 (>99% sequence identity) for Flavobacterium saliperosum subclade from Microbeatlas

Aquatic Samples	246
Soil Samples	101
Animal Samples	27
Plant Samples	3
Total Samples	377

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15874]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122386]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15874]	Flavobacterium saliperosum strain AS 1.3801 16S ribosomal RNA gene, partial sequence	DQ021903	1408	GenBank ENA	329186 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium saliperosum S13	GCA_000498515	contig	GenBank ENA	1341155 tax ID
[Ref.: #66792]	Flavobacterium saliperosum CGMCC 1.3801	GCA_900100625	scaffold	GenBank ENA	329186 tax ID	*
[Ref.: #66792]	Flavobacterium saliperosum S13	1341155.3	wgs	PATRIC	1341155 tax ID	*
[Ref.: #66792]	Flavobacterium saliperosum strain CGMCC 1.3801	329186.7	wgs	PATRIC	329186 tax ID	*
[Ref.: #66792]	Flavobacterium saliperosum S13	2576861653	draft	JGI IMG/M	1341155 tax ID	*
[Ref.: #66792]	Flavobacterium saliperosum CGMCC 1.3801	2596583547	draft	JGI IMG/M	329186 tax ID	*

[Ref.: #15874]	GC-content	41.0 mol%
[Ref.: #31692]	GC-content	41 mol%
[Ref.: #15874]	GC-content	39.6 mol%	sequence analysis
[Ref.: #67770]	GC-content	41 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium saliperosum CGMCC 1.3801 NCBI: GCA_900100625.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium saliperosum CGMCC 1.3801 NCBI: GCA_900100625.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.25	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.91	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.338	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.303	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.833	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.5	no

Availability in culture collections External links

[Ref.: #15874]

Culture collection no.

DSM 21664, CGMCC 1.3801, JCM 13331, CCUG 60843, CIP 109164

[Ref.: #75040]

SI-ID 286038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium cauense sp. nov., isolated from sediment of a eutrophic lake.	Qu JH, Yuan HL, Li HF, Deng CP	Int J Syst Evol Microbiol	10.1099/ijs.0.009688-0	2009	*
Phylogeny	Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil.	Weon HY, Song MH, Son JA, Kim BY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64935-0	2007	*
Phylogeny	Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment.	Wang ZW, Liu YH, Dai X, Wang BJ, Jiang CY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64065-0	2006	*

References

#15874

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21664

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31692

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27969 (see below)

#33996 ; Curators of the CIP;
#62462 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60843

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75040

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID286038.1 )

#122386 Collection of Institut Pasteur ; Curators of the CIP; CIP 109164

#27969

IJSEM 439 2006 ( DOI 10.1099/ijs.0.64065-0 , PubMed 16449454 )

* These data were automatically processed and therefore are not curated

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Flavobacterium saliperosum CGMCC 1.3801

Flavobacterium saliperosum CGMCC 1.3801

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