Flavobacterium saliperosum (DSM 21664, CGMCC 1.3801, JCM 13331)

Name: Flavobacterium saliperosum (DSM 21664, CGMCC 1.3801, JCM 13331)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5558

Type strain

Strain Designation S13

Culture col. no. DSM 21664 CGMCC 1.3801 JCM 13331 CCUG 60843 CIP 109164 1 more

NCBI tax ID(s) 329186

Special Collections DSMZ CCUG JCM CIP Literature strains

Links

Flavobacterium saliperosum S13 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from freshwater lake sediment.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286038

AS 1.3801,CGMCC 1.3801,JCM 13331,CIP 109164,LMG 28396,DSM 21664,CCUG 60843

@ref 20215

Last LPSN update 2025-12-16 09:48:06

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium saliperosum

Full scientific name Flavobacterium saliperosum Wang et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31692	negative	1.5-2.5 µm	0.35-0.55 µm	rod-shaped
122386	negative			rod-shaped
125438					94.5
125438	negative				99.25
125439	negative				99.9

Colony morphology

@ref	Incubation period
62462	2 days
122386

Pigmentation

31692

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15874	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
33996	MEDIUM 328- for nutrient agar		Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
122386	CIP Medium 328	Medium recipe at CIP
122386	CIP Medium 368	Medium recipe at CIP
122386	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15874	positive	growth	25	mesophilic
31692	positive	growth	20-34
31692	positive	optimum	28	mesophilic
33996	positive	growth	30	mesophilic
62462	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31692	positive	optimum	7.5
31692	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31692	aerobe
62462	aerobe
125439	obligate aerobe	93

Spore formation

@ref	Spore formation	Confidence
31692
125438		93.303
125439		99.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31692	NaCl	positive	growth	0-1 %
31692	NaCl	positive	optimum	0-1 %

Observation

@ref	Observation
31692	aggregates in chains
67770	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122386	17632 ChEBI	nitrate	-	reduction
122386	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122386	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122386	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31692	catalase	+	1.11.1.6
122386	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
31692	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122386	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122386	ornithine decarboxylase	-	4.1.1.17
122386	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
122386	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122386	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
15874	freshwater lake sediment	Taihu Lake (also known as Lake Tai; 120° 02' 16.8'' E, 31° 27' 10.7'' N), Jiangsu Province	China	CHN	Asia	31.453	120.038 31.453/120.038
62462	Fresh water sediment	Jiangsu Province,Taihu Lake	China	CHN	Asia			2005
67770	Freshwater sediment of Taihu Lake in central China
122386	Environment, Fresh water, sediment	Taihu lake, Jiangsu	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ021903 (>99% sequence identity) for Flavobacterium saliperosum subclade from Microbeatlas

Aquatic Samples	246
Soil Samples	101
Animal Samples	27
Plant Samples	3
Total Samples	377

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15874	1	Risk group (German classification) According to TRBA 466
122386	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2596583547 annotated assembly for Flavobacterium saliperosum CGMCC 1.3801	scaffold	GCA_900100625	329186.7	2596583547	329186	73.7
67770	Fsal1.0 assembly for Flavobacterium saliperosum S13	contig	GCA_000498515	1341155.3	2576861653	1341155	63.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15874	Flavobacterium saliperosum strain AS 1.3801 16S ribosomal RNA gene, partial sequence	DQ021903	1408		329186

GC content

@ref	GC-content (mol%)	Method
15874	41.0
31692	41
15874	39.6	sequence analysis
67770	41	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium saliperosum CGMCC 1.3801
NCBI: GCA_900100625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	78.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium saliperosum CGMCC 1.3801
NCBI: GCA_900100625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.25	no
125438	anaerobic	anaerobicⓘ	no	97.91	yes
125438	aerobic	aerobicⓘ	yes	86.34	yes
125438	spore-forming	spore-formingⓘ	no	93.30	yes
125438	thermophilic	thermophileⓘ	no	98.83	yes
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Stress	Hexamerization and thermostability emerged very early during geranylgeranylglyceryl phosphate synthase evolution.	Kropp C, Straub K, Linde M, Babinger P.	Protein Sci	10.1002/pro.4016	2021
Phylogeny	Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Phylogeny	Flavobacterium enshiense sp. nov., isolated from soil, and emended descriptions of the genus Flavobacterium and Flavobacterium cauense, Flavobacterium saliperosum and Flavobacterium suncheonense.	Dong K, Chen F, Du Y, Wang G.	Int J Syst Evol Microbiol	10.1099/ijs.0.039974-0	2013
Phylogeny	Flavobacterium indicum sp. nov., isolated from warm spring water in Assam, India.	Saha P, Chakrabarti T.	Int J Syst Evol Microbiol	10.1099/ijs.0.64309-0	2006
Phylogeny	Flavobacterium cauense sp. nov., isolated from sediment of a eutrophic lake.	Qu JH, Yuan HL, Li HF, Deng CP	Int J Syst Evol Microbiol	10.1099/ijs.0.009688-0	2009
Phylogeny	Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil.	Weon HY, Song MH, Son JA, Kim BY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64935-0	2007
Phylogeny	Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment.	Wang ZW, Liu YH, Dai X, Wang BJ, Jiang CY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64065-0	2006

References

#15874	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21664
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27969	IJSEM 439 2006 ( DOI 10.1099/ijs.0.64065-0 , PubMed 16449454 )
#31692	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27969
#33996	; Curators of the CIP;
#62462	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60843
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122386	Collection of Institut Pasteur ; Curators of the CIP; CIP 109164
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium saliperosum (DSM 21664, CGMCC 1.3801, JCM 13331)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900100625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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