Name: Flavobacterium xinjiangense ZF-6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5556

Type strain:

Species: Flavobacterium xinjiangense

Strain Designation: ZF-6

Culture col. no.: DSM 19743, AS 1.2749, JCM 11314, CGMCC 1.2749, CIP 108285, KCTC 12491

Strain history: CIP <- 2004, JCM <- 2001, F. Zhu: strain ZF-6

NCBI tax ID(s): 178356 (species)

SI-ID 88290

JCM11314, AS 1.2749, LMG 21985, CIP 108285, KCTC 12491, DSM 19743, CGMCC 1.2749

Special Collections

Section

Flavobacterium xinjiangense ZF-6 is a Gram-negative bacterium that was isolated from frozen soil from the China No. 1 glacier.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium xinjiangense**
	Full Scientific Name (LPSN)	Flavobacterium xinjiangense Zhu et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #123979]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.455

[Ref.: #123979]	Cell shape	rod-shaped

[Ref.: #123979]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #123979]	Pigment production	no
[Ref.: #123979]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8277]

Culture medium

PYG MEDIUM (B) (DSMZ Medium 1139)

[Ref.: #8277]

Culture medium growth

[Ref.: #8277]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8277]

Culture medium composition

expand / minimize

[Ref.: #8277]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8277]

Culture medium growth

[Ref.: #8277]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8277]

Culture medium composition

expand / minimize

[Ref.: #34224]

Culture medium

MEDIUM 469 - for Pseudomonas psychrophila

[Ref.: #34224]

Culture medium growth

[Ref.: #34224]

Culture medium composition

expand / minimize

[Ref.: #123979]

Culture medium

CIP Medium 566

[Ref.: #123979]

Culture medium growth

[Ref.: #123979]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123979]

Culture medium

CIP Medium 469

[Ref.: #123979]

Culture medium growth

[Ref.: #123979]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8277]		growth	11 °C
[Ref.: #34224]		growth	10 °C
[Ref.: #67770]		growth	11 °C
[Ref.: #123979]		growth	5-15 °C
[Ref.: #123979]	no	growth	25 °C
[Ref.: #123979]	no	growth	30 °C
[Ref.: #123979]	no	growth	37 °C
[Ref.: #123979]	no	growth	41 °C
[Ref.: #123979]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.958
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #123979]	NaCl		growth	0	%
[Ref.: #123979]	NaCl	no	growth	2	%
[Ref.: #123979]	NaCl	no	growth	4	%
[Ref.: #123979]	NaCl	no	growth	6	%
[Ref.: #123979]	NaCl	no	growth	8	%
[Ref.: #123979]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123979]	citrate ChEBI	-	carbon source
[Ref.: #123979]	esculin ChEBI	+	hydrolysis
[Ref.: #123979]	hippurate ChEBI	+	hydrolysis
[Ref.: #123979]	malonate ChEBI	-	assimilation
[Ref.: #123979]	nitrate ChEBI	-	builds gas from
[Ref.: #123979]	nitrate ChEBI	-	reduction
[Ref.: #123979]	nitrite ChEBI	-	builds gas from
[Ref.: #123979]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123979]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123979]		acetoin ChEBI	-
[Ref.: #123979]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123979]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123979]	amylase	+
[Ref.: #123979]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123979]	caseinase	-	3.4.21.50
[Ref.: #123979]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #123979]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123979]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123979]	gelatinase	-
[Ref.: #123979]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123979]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123979]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123979]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123979]	oxidase	-
[Ref.: #123979]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123979]	tryptophan deaminase	-
[Ref.: #123979]	tween esterase	-
[Ref.: #123979]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123979]	11056	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8277]	Sample type/isolated from	frozen soil from the China No. 1 glacier
[Ref.: #8277]	Geographic location (country and/or sea, region)	North-West China, Xinjiang province
[Ref.: #8277]	Country	China
[Ref.: #8277]	Country ISO 3 Code	CHN
[Ref.: #8277]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Frozen soil from the China No. 1 glacier (Xinjiang Province)

[Ref.: #123979]	Sample type/isolated from	Environment, Frozen soil from the China No 1 glacier
[Ref.: #123979]	Country	China
[Ref.: #123979]	Country ISO 3 Code	CHN
[Ref.: #123979]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF433173 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	1520
Soil Samples	203
Animal Samples	90
Plant Samples	165
Total Samples	1978

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8277]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123979]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8277]	Flavobacterium xinjiangense AS1.2749 16S ribosomal RNA gene, partial sequence	AF433173	1466	GenBank ENA	178356 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium xinjiangense CGMCC 1.2749	GCA_900142885	scaffold	GenBank ENA	178356 tax ID
[Ref.: #66792]	Flavobacterium xinjiangense strain CGMCC 1.2749	178356.3	wgs	PATRIC	178356 tax ID	*
[Ref.: #66792]	Flavobacterium xinjiangense CGMCC 1.2749	2663762760	draft	JGI IMG/M	178356 tax ID	*

[Ref.: #8277]

GC-content

34.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium xinjiangense CGMCC 1.2749 NCBI: GCA_900142885.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium xinjiangense strain CGMCC 1.2749 PATRIC: 178356.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.455	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.33	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.958	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.35	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.654	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	no

Availability in culture collections External links

[Ref.: #8277]

Culture collection no.

DSM 19743, AS 1.2749, JCM 11314, CGMCC 1.2749, CIP 108285, KCTC 12491

[Ref.: #75038]

SI-ID 88290

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011	*
Phylogeny	Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier.	Zhu F, Wang S, Zhou P	Int J Syst Evol Microbiol	10.1099/ijs.0.02310-0	2003	*

References

#8277

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19743

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34224 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75038

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88290.1 )

#123979 Collection of Institut Pasteur ; Curators of the CIP; CIP 108285
* These data were automatically processed and therefore are not curated

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Flavobacterium xinjiangense CGMCC 1.2749

Flavobacterium xinjiangense strain CGMCC 1.2749

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