Name: Flavobacterium xinjiangense ZF-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5556

Type strain:

Species: Flavobacterium xinjiangense

Strain Designation: ZF-6

Culture col. no.: DSM 19743, AS 1.2749, JCM 11314, CGMCC 1.2749, CIP 108285, KCTC 12491

Strain history: F. Zhu ZF-6.

NCBI tax ID(s): 178356 (species)

Section

Flavobacterium xinjiangense ZF-6 is a psychrophilic bacterium that was isolated from frozen soil from the China No. 1 glacier.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium xinjiangense**
	Full Scientific Name (LPSN)	Flavobacterium xinjiangense Zhu et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8277]

Culture medium

PYG MEDIUM (B) (DSMZ Medium 1139)

[Ref.: #8277]

Culture medium growth

[Ref.: #8277]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8277]

Culture medium composition

expand / minimize

[Ref.: #8277]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8277]

Culture medium growth

[Ref.: #8277]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8277]

Culture medium composition

expand / minimize

[Ref.: #34224]

Culture medium

MEDIUM 469 - for Pseudomonas psychrophila

[Ref.: #34224]

Culture medium growth

[Ref.: #34224]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8277]	growth	11 °C
[Ref.: #34224]	growth	10 °C
[Ref.: #67770]	growth	11 °C

[Ref.: #8277]	Temperature range	psychrophilic
[Ref.: #34224]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8277]	Sample type/isolated from	frozen soil from the China No. 1 glacier
[Ref.: #8277]	Geographic location (country and/or sea, region)	North-West China, Xinjiang province
[Ref.: #8277]	Country	China
[Ref.: #8277]	Country ISO 3 Code	CHN
[Ref.: #8277]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Frozen soil from the China No. 1 glacier (Xinjiang Province)
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF433173 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	1520
Soil Samples	203
Animal Samples	90
Plant Samples	165
Total Samples	1978

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8277]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8277]	Flavobacterium xinjiangense AS1.2749 16S ribosomal RNA gene, partial sequence	AF433173	1466	ENA	178356 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium xinjiangense CGMCC 1.2749	GCA_900142885	scaffold	GenBank	178356 tax ID
[Ref.: #66792]	Flavobacterium xinjiangense strain CGMCC 1.2749	178356.3	wgs	PATRIC	178356 tax ID	*
[Ref.: #66792]	Flavobacterium xinjiangense CGMCC 1.2749	2663762760	draft	JGI IMG/M	178356 tax ID	*

[Ref.: #8277]

GC-content

34.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium xinjiangense CGMCC 1.2749 NCBI: GCA_900142885.1
[Ref.: #69480]	spore-forming	no	99.988	yes
[Ref.: #69480]	gram-positive	no	99.985	no
[Ref.: #69480]	anaerobic	no	99.893	no
[Ref.: #69480]	thermophile	no	99.981	yes
[Ref.: #69480]	motile	no	81.062	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium xinjiangense CGMCC 1.2749 NCBI: GCA_900142885.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #8277]

Culture collection no.

DSM 19743, AS 1.2749, JCM 11314, CGMCC 1.2749, CIP 108285, KCTC 12491

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium xueshanense sp. nov. and Flavobacterium urumqiense sp. nov., two psychrophilic bacteria isolated from glacier ice.	Dong K, Liu H, Zhang J, Zhou Y, Xin Y	Int J Syst Evol Microbiol	10.1099/ijs.0.030049-0	2011	*
Phylogeny	Flavobacterium xinjiangense sp. nov. and Flavobacterium omnivorum sp. nov., novel psychrophiles from the China No. 1 glacier.	Zhu F, Wang S, Zhou P	Int J Syst Evol Microbiol	10.1099/ijs.0.02310-0	2003	*

References

#8277

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19743

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34224 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium xinjiangense CGMCC 1.2749

Flavobacterium xinjiangense CGMCC 1.2749

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